% ALIGN_CLEAN, R.B. Russell, 1995
% Searching for domain descriptors...
%   2 domain descriptions read in
/disk3/pdb/pdb1enh.ent 1enh { ALL 
  -0.98245   -0.10039   -0.15724        15.63115  
   0.18072   -0.30357   -0.93551        66.00494  
   0.04623   -0.94754    0.31646        37.92813  }
/disk3/pdb/pdb1bia.ent 1bia.1 { _ 1 _ to _ 63 _ 
  -0.77918    0.59495   -0.19712        49.48120  
   0.58987    0.80246    0.09023      -135.94510  
   0.21185   -0.04600   -0.97628        71.61566  }
% Reading block file...
Blocfile read: Length: 69
% Searching for STAMP data...
%   268459416 STAMP fields found: T P A G 
% Block file contains 5 sequences; the alignment length is 69
% Cleaning up allowing continuous segments of 3 or greater...
%  Cleaning done.
% The final alignment length is 69
% The alignment:
>1enh    (cluster A) sequence
>1bia.1    (cluster B) sequence
>space  
>1enh_dssp  (cluster A) secondary structure from DSSP
>1bia.1_dssp   (cluster B) secondary structure from DSSP
#T  -- '1' = equivalenced residues 

#P  -- averaged Pij

#A  -- distance between averaged CA atoms in angtroms

#G  -- Pij' value

*
R  - 
P  - 
R  - 
T  - 
AM --
FK --
SD --  0    0.02100    2.72981    0.41000 
SN H-  0    0.11200    2.56315    1.32000 
ET HH  0    0.22400    2.36743    2.44000 
QV HH  0    0.41200    1.94305    4.32000 
LP HH  0    0.41200    1.99585    4.32000 
AL HH  1    0.47600    1.94967    4.96000 
RK HH  1    0.60300    1.54115    6.23000 
LL HH  1    0.75200    0.60366    7.72000 
KI HH  1    0.74000    1.35545    7.60000 
RA HH  1    0.79300    0.87535    8.13000 
EL HH  1    0.65800    1.51758    6.78000 
FL HH  1    0.53000    1.89742    5.50000 
NA HT  1    0.64100    1.68199    6.61000 
EN HT  1    0.52300    1.79681    5.43000 
N  - 
RG SS  0    0.07900    2.73609    0.99000 
YE SS  0    0.00000    3.01454    0.12000 
LF --  0    0.10700    2.53767    1.27000 
TH -B  0    0.27200    2.31244    2.92000 
E  H 
R  H 
RS H-  0    0.17700    1.37804    1.97000 
RG HH  1    0.86600    0.94304    8.86000 
QE HH  1    0.87400    0.40501    8.94000 
QQ HH  1    0.82600    1.22096    8.46000 
LL HH  1    0.88000    1.14878    9.00000 
SG HH  1    0.91100    0.88623    9.31000 
SE HH  1    0.89200    1.09618    9.12000 
ET HH  1    0.84400    1.27467    8.64000 
LL HH  1    0.88600    1.08677    9.06000 
GG TT  1    0.89900    1.00244    9.19000 
LM -S  1    0.86300    1.15798    8.83000 
NS --  1    0.89900    0.99351    9.19000 
ER HH  1    0.93200    0.71754    9.52000 
AA HH  1    0.92900    0.79260    9.49000 
QA HH  1    0.91700    0.95323    9.37000 
II HH  1    0.92300    0.77015    9.43000 
KN HH  1    0.88300    1.00131    9.03000 
IK HH  1    0.80700    1.34074    8.27000 
WH HH  1    0.88400    1.06003    9.04000 
FI HH  1    0.82000    0.94815    8.40000 
QQ HH  1    0.60500    1.55843    6.25000 
NT HH  1    0.53400    1.70213    5.54000 
KL HH  1    0.70900    1.17758    7.29000 
RR HH  1    0.70400    1.25662    7.24000 
AD HH  0    0.42400    1.82292    4.44000 
KW HT  0    0.42700    1.66256    4.47000 
 G  T
 V  -
 D  -
 V  -
 F  E
 T  E
 V  E
 P  T
 G  T
 K  T
 G  E
 Y  E
 S  E
 L  -
 P  S
 E  S
*