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15 | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | |
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. | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 |
Predicted Secondary structure |   |
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|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |
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Query SS confidence |   |
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| . |
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Query Sequence |   |
L | L | V | A | G | K | K | K | N | T | G | E | E | W | D | V | L | E | F | S | S | L | T | E | L | K | K | Y | R | K | S | H | P | E | K | M | A | F | S | Y | S | Y | . |
. |
. |
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A | L | S | R | G | V | D | T | Q | F | R | H | I | N | I | A | E | A | D | H | F | K | Q | F | L | R | Q | I | K | R | A | G | L | D |
Query Conservation |   |
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| . | . | . | . |
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Alig confidence |   |
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| . | . | . |
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Template Conservation |   |
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|   |   |   |   |   |
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|   |   | . | . | . |
|   |
|   |   |   |
|   |   |   |   |   |   |
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|   |   |   |   |
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| . | . | . | . | . |
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|   |
Template Sequence |   |
V | V | G | T | L | L | N | K | L | P | G | D | V | W | T | V | . |
. |
. |
A | E | I | Q | A | L | K | Q | S | V | E | Q | E | G | L | A | L | L | G | I | E | S | V | A | I | H | D | A | I | K | A | G | T | D | Q | R | D | H | Y | I | . |
. |
. |
. |
. |
D | N | Y | R | Q | T | L | R | N | L | G | K | C | G | I | S |
Template Known Secondary structure |   |
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| S | S | S |
| T | T |
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|  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |
| S |
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|  |  |  |  |  | T |
| S | T |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
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Template Predicted Secondary structure |   |
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|  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
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|  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
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Template SS confidence |   |
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  |   |
29 | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | |
|
|
. | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | |
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. | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 |
  |
  |   |
91 |
Predicted Secondary structure |   |
 |
Query SS confidence |   |
|
Query Sequence |   |
I |
Query Conservation |   |
|
Alig confidence |   |
|
Template Conservation |   |
  |
Template Sequence |   |
L |
Template Known Secondary structure |   |
 |
Template Predicted Secondary structure |   |
 |
Template SS confidence |   |
|
  |   |
101 |
  |