Job Description Q02885 Confidence 2.48% Date Thu Jan 5 12:33:21 GMT 2012 Rank 91 Aligned Residues 73 % Identity 15% Template c3md1B_ PDB info PDB header:rna binding protein Chain: B: PDB Molecule:nuclear and cytoplasmic polyadenylated rna-binding protein PDBTitle: crystal structure of the second rrm domain of yeast poly(u)-binding2 protein (pub1) Resolution 1.60 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Y	T	L	L	V	A	G	K	K	K	N	T	G	E	E	W	D	V	L	E	F	S	S	L	T	E	L	K	K	Y	R	K	S	H	P	E	K	M	A	F	S	Y	S	Y	A	L	S	R	G	V	D	T	Q	F	R	H	I	N	I	A	E	A	D	H	F	K	Q	F	L	R	Q	I	K	R	A	G	L	D	I
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	F	N	L	F	V	G	D	L	N	V	N	V	D	D	.	.	.	.	.	.	.	.	.	.	E	T	L	R	N	A	F	K	D	F	P	S	Y	L	S	G	H	V	M	W	D	M	Q	T	G	S	S	R	G	Y	G	F	V	S	F	T	S	Q	D	D	A	Q	N	A	M	D	S	M	Q	G	Q	D	L	N	G
Template Known Secondary structure									S			T	T				.	.	.	.	.	.	.	.	.	.								T	T	S	T	T										T	T	T												S													T	T				T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.											.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		92	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	P	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		231	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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