Return to main results Retrieve Phyre Job Id

Job DescriptionP09394
Confidence90.32%DateThu Jan 5 11:02:21 GMT 2012
Rank30Aligned Residues81
% Identity12%Templated1ob0a2
SCOP infoTIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain
Resolution1.83

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   203......210... ......220.........230.........240.........250..... ....260.......
Predicted Secondary structure 



......





















.........



Query SS confidence 










. . . . . .









































. . . . . . . . .











Query Sequence  DKVYLQCFDAD. . . . . . ELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVN. . . . . . . . . YNYDWMFKPGAM
Query Conservation    
 
 


  ...... 
  
                
                    .........            
Alig confidence 










......









































.........











Template Conservation         
 
     


  

  




  


  
 
 

         

     
          


  

  

Template Sequence  NGTLMQYFEWYMPNDGQHWKRLQNDSAYLAEHGITAVWIPPAYKGTSQADVGYGAYDLYDLGEFHQKGTVRTKYGTKGEL
Template Known Secondary structure 





TT

SSS
TT




SB
SSTT

STT
SBTT
SS
S
BTTBSS
SS

Template Predicted Secondary structure 


















































Template SS confidence 















































































   4.....10.........20.........30.........40.........50.........60.........70.........80...
 
   268.270.........280.........290.........300.........310..
Predicted Secondary structure 





















Query SS confidence 












































Query Sequence  KQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHP
Query Conservation                                  
  
   

 
  
Alig confidence 

.............................













Template Conservation 
 .............................

   
  

 


Template Sequence  QS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . AIKSLHSRDINVYG
Template Known Secondary structure  .............................TT
Template Predicted Secondary structure  .............................


Template SS confidence 












































   84. ....90.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions