Job Description P09394 Confidence 100.00% Date Thu Jan 5 11:02:21 GMT 2012 Rank 17 Aligned Residues 246 % Identity 17% Template c3rlhA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:sphingomyelin phosphodiesterase d lisictox-alphaia1a; PDBTitle: crystal structure of a class ii phospholipase d from loxosceles2 intermedia venom Resolution 1.72 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		28	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.				.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure							.																																																		.	.	.
Query SS confidence							.																																																		.	.	.
Query Sequence		S	N	E	K	I	.	V	I	A	H	R	G	A	S	G	Y	L	P	E	H	T	L	P	A	K	A	M	A	Y	A	Q	G	A	D	Y	L	E	Q	D	L	V	M	T	K	D	D	N	L	V	V	L	H	D	H	Y	.	.	.	L	D	R	V	T	D	V	A	D	R	F	P	D	R	A	R	K	D	G	R	Y	Y
Query Conservation							.																																																		.	.	.
Alig confidence							.						.	.	.	.	.	.	.																																						.	.	.							.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.																																															.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	R	R	P	I	W	I	M	G	H	M	.	.	.	.	.	.	.	V	N	A	I	G	Q	I	D	E	F	V	N	L	G	A	N	S	I	E	T	D	V	S	F	D	D	N	A	N	P	E	Y	T	Y	H	G	I	P	C	D	C	G	R	N	C	K	.	.	.	.	.	.	.	.	.	.	.	.	K	Y	E	N
Template Known Secondary structure											S		.	.	.	.	.	.	.			S										T	T		S								B		T	T	S		B		B					S	S			T	T	S		S		.	.	.	.	.	.	.	.	.	.	.	.				B
Template Predicted Secondary structure													.	.	.	.	.	.	.																																															.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.								.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.													60	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	D	F	T	L	D	E	I	K	S	L	K	F	T	E	G	F	D	I	E	N	G	K	K	V	Q	T	Y	P	G	R	F	P	M	G	K	S	D	F	R	V	H	T	F	E	E	E	I	E	F	V	Q	G	L	N	H	S	T	G	K	N	I	G	I	Y	P	E	I	K	A	P	W	F	H	H	Q	E	G	K
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.
Template Sequence		F	N	D	F	L	K	G	L	R	S	A	T	T	P	G	N	S	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	Q	E	K	L	V	L	V	V	F	D	L	K	T	G	S	L	Y	D	.	.	.	.	.	.	.	N	Q	A	N	D	A	G	K	K	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure													T	S	T	T	S	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T										G	G	G	S		G	.	.	.	.	.	.	.	G	G								.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80																		.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.								100	.	.	.	.	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.								.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.
Query Sequence		D	I	A	A	K	T	L	E	V	L	K	K	Y	G	Y	T	G	K	D	D	K	V	Y	L	Q	C	F	D	A	D	E	L	.	.	.	.	.	.	.	K	R	I	K	N	E	L	E	P	K	M	G	M	E	L	N	L	V	Q	L	I	A	Y	T	D	W	N	E	T	Q	Q	K	Q	P	D	G	S	W	V	N	Y
Query Conservation																																		.	.	.	.	.	.	.
Alig confidence		.																																.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.
Template Conservation		.																																																																						.	.	.	.	.	.	.	.	.	.
Template Sequence		.	L	A	K	N	L	L	Q	H	Y	W	N	N	G	N	N	G	G	R	A	Y	I	V	L	S	I	P	D	L	N	H	Y	P	L	I	K	G	F	K	D	Q	L	T	K	D	G	H	P	E	L	M	D	K	V	G	H	D	F	S	G	N	D	D	I	G	D	V	G	K	A	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.									T	S	G	G	G	S	S											S		G	G	G	T													T	T		G	G	G	G	G	G							S											.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.																																																																						.	.	.	.	.	.	.	.	.	.
Template SS confidence
			109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Y	D	W	M	F	K	P	G	A	M	K	Q	V	A	E	Y	A	D	G	I	G	P	D	Y	H	M	L	I	E	E	T	S	Q	P	G	N	I	K	L	T	G	M	V	Q	D	A	Q	Q	N	K	L	V	V	H	P	Y	T	V	R	S	D	K	L	P	E	Y	T	P	D	V	N	Q	L	Y	D	A	L	Y	N
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.																																																										.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.																																																										.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	Y	K	K	A	G	I	T	G	H	I	W	Q	S	D	G	I	T	N	C	L	P	R	G	L	S	R	V	N	A	A	V	A	N	R	D	S	A	N	G	F	I	N	K	V	Y	Y	W	T	V	D	K	R	S	T	T	R	D	.	.	.	.	.	.	.	.	.	.	.	A	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.					T			S										T	T	S				S											T	S	T	T				S									S							.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																																										.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
												183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.												240	.
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	G	V	N	G	L	F	T	D	F	P	D	K	A	V	K	F	L	N	K	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	A	G	V	D	G	I	M	T	N	Y	P	D	V	I	T	D	V	L	N	E	A
Template Known Secondary structure				T		S					S										T	S
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions