Job Description P09394 Confidence 100.00% Date Thu Jan 5 11:02:21 GMT 2012 Rank 6 Aligned Residues 250 % Identity 18% Template c3mz2A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:glycerophosphoryl diester phosphodiesterase; PDBTitle: crystal structure of a glycerophosphoryl diester phosphodiesterase2 (bdi_3922) from parabacteroides distasonis atcc 8503 at 1.55 a3 resolution Resolution 1.55 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		A	D	S	N	E	K	I	V	I	A	H	R	G	A	S	G	Y	.	L	P	E	H	T	L	P	A	K	A	M	A	Y	A	Q	G	A	D	Y	L	E	Q	D	L	V	M	T	K	D	D	N	L	V	V	L	H	D	H	Y	L	D	R	V	T	D	V	A	D	R	F	P	D	R	A	R	K	D	G	R	Y	Y	A
Query Conservation																			.
Alig confidence																			.																																														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	D	D	R	I	P	L	I	S	G	H	R	G	G	R	G	K	G	Y	P	E	N	S	X	E	T	F	E	N	T	L	S	Y	T	P	A	T	F	E	I	D	P	R	L	T	K	D	S	V	I	V	L	F	H	D	D	T	L	E	R	T	S	N	.	.	.	.	.	.	.	.	.	.	.	.	G	T	G	K	V
Template Known Secondary structure			T	T								G	G	G			B	T	T	B		T	T																								T	T								S	S	S	S	T	T	T	B	S	.	.	.	.	.	.	.	.	.	.	.	.			S		G
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.													.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	F	T	L	D	E	I	K	S	L	K	F	T	E	G	F	D	I	E	N	G	K	K	V	Q	T	Y	P	G	R	F	P	M	G	K	S	D	F	R	V	H	T	F	E	E	E	I	E	F	V	Q	G	L	N	H	S	T	G	K	N	I	G	I	Y	P	E	I	K	A	P	W	F	H	H	Q	E	G	K	D
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.
Template Sequence		S	D	Y	T	W	E	E	L	Q	N	F	R	L	K	D	P	E	G	N	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	N	Y	R	I	P	T	L	E	E	A	I	R	W	A	R	G	.	.	.	.	.	.	.	K	T	I	L	I	L	D	K	K	.	.	.	.	.	.	.	.	.	D	V
Template Known Secondary structure		G	G	S						T	T	S		B	B		T	T			B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S					B									T	T	.	.	.	.	.	.	.	T								S	.	.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.																	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.								.	.	.	.	160	.	.	.	.										.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	A	K	T	L	E	V	L	K	K	Y	G	Y	T	G	K	D	D	K	V	Y	L	Q	C	F	D	A	D	E	L	K	R	I	K	N	E	L	E	P	K	M	G	M	E	L	N	L	V	Q	L	I	A	Y	T	D	W	N	E	T	Q	Q	K	Q	P	D	G	S	W	V	N	Y	N	Y	D	W	M	F	K	P
Query Conservation
Alig confidence																.	.	.																							.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.																							.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	X	E	R	T	A	Q	L	I	T	D	X	Q	A	.	.	.	E	P	Y	V	X	I	T	V	H	D	G	A	S	A	R	F	F	Y	E	K	N	P	.	.	.	.	.	N	F	X	F	E	A	F	V	K	T	K	E	A	V	Q	D	Y	E	D	N	G	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure													T	T		.	.	.	T	T	T						S	S												T	.	.	.	.	.	T									S										T	T			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																.	.	.																							.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180				.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.						.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	M	K	Q	V	A	E	Y	A	D	G	I	G	P	D	Y	H	M	L	I	E	E	T	S	Q	P	G	N	I	K	L	T	G	M	V	Q	D	A	Q	Q	N	K	L	V	V	H	P	Y	T	V	R	S	D	K	L	P	E	Y	T	P	D	V	N	Q	L	Y	D	A	L	Y	N	K	A	G	V	N	G	L	F
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	S	H	I	X	A	Y	V	G	P	K	I	T	P	E	V	R	E	V	I	D	X	L	H	E	R	G	V	X	C	X	I	S	T	A	P	S	D	D	K	L	S	T	.	P	E	S	R	A	E	A	Y	R	X	I	I	R	Q	G	V	D	I	I	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G							S	S															T	T	B							T	T	T	G	G	G	S	S	S	.														T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Template SS confidence
																		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
		345	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	F	P	D	K	A	V	K	F	L	N	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	D	R	P	I	E	V	A	E	A	I	S	S
Template Known Secondary structure			S										G	G
Template Predicted Secondary structure
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions