Job Description P09394 Confidence 100.00% Date Thu Jan 5 11:02:21 GMT 2012 Rank 10 Aligned Residues 265 % Identity 24% Template c3ch0A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:glycerophosphodiester phosphodiesterase; PDBTitle: crystal structure of glycerophosphoryl diester phosphodiesterase2 (yp_677622.1) from cytophaga hutchinsonii atcc 33406 at 1.50 a3 resolution Resolution 1.50 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.		.	.	.
Predicted Secondary structure																																																																														.
Query SS confidence																																																																														.
Query Sequence		D	S	N	E	K	I	V	I	A	H	R	G	A	S	G	Y	L	P	E	H	T	L	P	A	K	A	M	A	Y	A	Q	G	A	D	Y	L	E	Q	D	L	V	M	T	K	D	D	N	L	V	V	L	H	D	H	Y	L	D	R	V	T	D	V	A	D	R	F	P	D	R	A	R	K	D	G	R	Y	.	Y	A	I
Query Conservation																																																																														.
Alig confidence																																																																														.
Template Conservation
Template Sequence		V	P	A	S	F	D	I	Q	G	H	R	G	C	R	G	L	L	P	E	N	T	I	A	A	F	T	K	A	L	L	L	G	V	T	T	L	E	F	D	L	V	I	S	K	D	N	R	V	V	V	S	H	D	T	F	F	H	H	E	I	T	X	X	V	D	G	E	D	V	T	E	A	N	E	K	N	F	N	L	Y
Template Known Secondary structure				T	T						T	T	T	T	T	T	T	S	S	T	T	S											T		S										T	T							S	S	S	B			T	T	T					T	T					T	T	T	G	G	G	S	B	G	G
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.		.	.	180	.	.	.	.
Predicted Secondary structure																																																																										.
Query SS confidence																																																																										.
Query Sequence		D	F	T	L	D	E	I	K	S	L	K	F	T	E	G	F	D	I	E	N	G	K	K	V	Q	T	Y	P	G	R	F	P	M	G	K	S	D	F	R	V	H	T	F	E	E	E	I	E	F	V	Q	G	L	N	H	S	T	G	K	N	I	G	I	Y	P	E	I	K	A	P	W	F	.	H	H	Q	E	G	K	D
Query Conservation																																																																										.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	X	N	Y	A	D	I	K	E	I	D	V	G	X	K	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	P	R	F	K	S	Q	K	K	V	P	A	V	K	P	L	F	R	E	L	I	E	T	A	E	K	L	S	A	K	I	Q	Y	N	G	E	I	K	S	T	V	E	G	D	N	I	D	H	P	N
Template Known Secondary structure		G	S						T	T	S			S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T		T	T	S									B													S	S											G	G	G	B	T	T	T	B
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.															100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	A	K	T	L	E	V	L	K	K	Y	G	Y	T	G	K	D	D	K	V	Y	L	Q	C	F	D	A	D	E	L	K	R	I	K	N	E	L	E	P	K	M	G	M	E	L	N	L	V	Q	L	I	A	Y	T	D	W	N	E	T	Q	Q	K	Q	P	D	G	S	W	V	N	Y	N	Y	D	W	M	F	K	P
Query Conservation
Alig confidence																																									.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	A	L	F	C	D	L	V	V	A	E	I	K	K	A	H	I	T	D	R	F	T	L	Q	S	F	D	V	R	A	L	E	Y	X	H	S	Q	Y	P	.	.	.	.	.	D	I	K	L	S	Y	L	V	E	T	K	G	T	L	K	K	Q	L	E	K	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																T	T		G	G	G						S													T	.	.	.	.	.	T	S								S	S								T	T	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																									.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.						.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	M	K	Q	V	A	E	Y	A	D	G	I	G	P	D	Y	H	M	L	I	E	E	T	S	Q	P	G	N	I	K	L	T	G	M	V	Q	D	A	Q	Q	N	K	L	V	V	H	P	Y	T	V	R	S	D	K	L	P	E	Y	T	P	D	V	N	Q	L	Y	D	A	L	Y	N	K	A	G	V	N	G	L	F
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	T	P	A	V	Y	S	P	D	V	T	L	V	S	K	K	D	I	D	A	A	H	K	L	G	X	R	V	I	P	W	T	V	N	T	K	E	E	I	E	T	.	.	.	.	.	.	.	.	.	.	.	L	I	S	L	G	V	D	G	I	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S			S					B	G	G	G												T	T						B				S							.	.	.	.	.	.	.	.	.	.	.					T		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																				211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.												.	.	.	.	.	.	.	.	260	.
		345	.	.	.	.	350	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	F	P	D	K	A	V	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	D	Y	P	D	L	F	F	E
Template Known Secondary structure			S		G	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		262	.	.	.	.	.	.	.	270

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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