Return to main results Retrieve Phyre Job Id

Job DescriptionP09394
Confidence54.48%DateThu Jan 5 11:02:21 GMT 2012
Rank69Aligned Residues85
% Identity9%Templatec3blpX_
PDB info PDB header:hydrolaseChain: X: PDB Molecule:alpha-amylase 1; PDBTitle: role of aromatic residues in human salivary alpha-amylase
Resolution1.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   199200.........210.........220.........230.........240.........250........ .260.........270...
Predicted Secondary structure 































.....


Query SS confidence 



























































. . . . .














Query Sequence  TGKDDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNY. . . . . DWMFKPGAMKQVAEY
Query Conservation        
 
 


   
  
                
                       .....               
Alig confidence 



























































.....










....
Template Conservation             
 
 
  
      

  

  



 
          
      
   

 

   

  


 ....
Template Sequence  TQQGRTSIVHLFEWRWVDIALECERYLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVSYKLCTRSGNEDEFRN. . . .
Template Known Secondary structure 

TT

TT

TTTTTT




S
BB

TTTTS
GGGGGSBS
S
S
BTTB
....
Template Predicted Secondary structure 


































....
Template SS confidence 















































































   6...10.........20.........30.........40.........50.........60.........70.........80.
 
   274.....280.........290.........300.........310..
Predicted Secondary structure 




















Query SS confidence 






































Query Sequence  ADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHP
Query Conservation                            
  
   

 
  
Alig confidence  .........................













Template Conservation  .........................

  

  

 


Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . MVTRCNNVGVRIYV
Template Known Secondary structure  .........................TT
Template Predicted Secondary structure  .........................


Template SS confidence 






































   82.......90.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions