Job Description P0CF60 Confidence 99.83% Date Wed Jan 25 15:20:36 GMT 2012 Rank 2 Aligned Residues 157 % Identity 15% Template d1c0ma2 SCOP info Ribonuclease H-like motif Ribonuclease H-like Retroviral integrase, catalytic domain Resolution 2.53

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	V	A	V	K	E	S	N	Q	R	W	C	S	D	G	F	E	F	C	C	D	N	G	E	R	L	R	V	T	F	A	L	D	C	C	D	R	E	A	L	H	W	A	V	T	T	G	G	F	N	S	E	T	V	Q	D	V	M	L	G	A	V	E	R	R	F	G	N	D	L	P	S	S	P	V	E	W	L	T
Query Conservation
Alig confidence																												.																			.																				.	.	.	.	.	.	.
Template Conservation																												.																			.																				.	.	.	.	.	.	.
Template Sequence		V	N	P	R	G	L	G	P	L	Q	I	W	Q	T	D	F	T	L	E	P	R	M	A	P	R	S	.	W	L	A	V	T	V	D	T	A	S	S	A	I	V	V	T	Q	H	.	G	R	V	T	S	V	A	V	Q	H	H	W	A	T	A	I	A	V	L	.	.	.	.	.	.	.	G	R	P	K	A	I	K	T
Template Known Secondary structure				S			S	S	T	T	S										G	G	G		S	S		.								T	T	T									.	S	S																		.	.	.	.	.	.	.				S
Template Predicted Secondary structure																												.																			.																				.	.	.	.	.	.	.
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.								.	.	.	.	.	.	.	120
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.							.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.
Query Sequence		D	N	G	S	C	Y	R	A	N	E	T	R	Q	F	A	R	M	L	G	L	E	P	K	N	T	A	V	R	S	P	E	S	N	G	I	A	E	S	F	V	K	T	I	K	R	D	Y	.	.	.	.	.	.	I	S	I	M	P	K	P	D	G	L	T	A	A	K	N	L	A	E	A	F	E	H	Y	N	E	W	H
Query Conservation																																																	.	.	.	.	.	.
Alig confidence																																																	.	.	.	.	.	.																									.	.
Template Conservation																																																																															.	.
Template Sequence		D	N	G	S	C	F	T	S	K	S	T	R	E	W	L	A	R	W	G	I	A	H	T	T	G	I	P	G	N	S	Q	G	Q	A	M	V	E	R	A	N	R	L	L	K	D	R	I	R	V	L	A	E	G	D	G	F	M	K	R	I	P	T	S	K	Q	G	E	L	L	A	K	A	M	Y	A	L	N	.	.	H
Template Known Secondary structure			S						S											T								S	S	S	S	T	T	S																					T	T		S	S	S			G	G	G														.	.	S
Template Predicted Secondary structure																																																																															.	.
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.			.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	H	S	A	L	G	Y	R	S	P	R	E	Y	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	E	R	G	E	N	T	K	T	P	I	Q	K	H
Template Known Secondary structure		S			S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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