Job Description P0CF60 Confidence 99.74% Date Wed Jan 25 15:20:36 GMT 2012 Rank 7 Aligned Residues 145 % Identity 17% Template c3nf9A_ PDB info PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:integrase; PDBTitle: structural basis for a new mechanism of inhibition of hiv integrase2 identified by fragment screening and structure based design Resolution 1.95 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	N	Q	R	W	C	S	D	G	F	E	F	C	C	D	N	G	E	R	L	R	V	T	F	A	L	D	C	C	D	R	E	A	L	H	W	A	V	T	T	G	G	F	N	S	E	T	V	Q	D	V	M	L	G	A	V	E	R	R	F	G	N	D	L	P	S	S	P	V	E	W	L	T	D	N	G	S	C	Y
Query Conservation
Alig confidence					.										.	.	.	.	.																					.																					.	.	.	.	.	.	.	.
Template Conservation					.										.	.	.	.	.																					.																					.	.	.	.	.	.	.	.
Template Sequence		S	P	G	.	I	W	Q	L	D	C	T	H	L	.	.	.	.	.	E	G	K	V	I	L	V	A	V	H	V	A	S	G	Y	I	E	A	E	V	.	I	P	A	E	T	G	Q	E	T	A	Y	F	L	L	K	L	A	G	R	W	.	.	.	.	.	.	.	.	P	V	K	T	V	H	T	D	N	G	S	N	F
Template Known Secondary structure			T	T	.										.	.	.	.	.	T	T									T	T	T	T							.		S	S																	S	.	.	.	.	.	.	.	.								S	S
Template Predicted Secondary structure					.										.	.	.	.	.																					.																					.	.	.	.	.	.	.	.
Template SS confidence
		57	.	.		60	.	.	.	.	.	.	.	.						.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.									.	110	.	.	.	.	.	.	.	.	.	120	.
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	N	E	T	R	Q	F	A	R	M	L	G	L	E	P	K	N	T	A	V	R	S	P	E	S	N	G	I	A	E	S	F	V	K	T	I	K	R	D	Y	I	S	I	M	P	K	P	D	G	L	T	A	A	K	N	L	A	E	A	F	E	H	Y	N	E	W	H	P	H	S	A	L	G	Y	R	S	P	R	E
Query Conservation
Alig confidence																																																			.	.																								.
Template Conservation																																																			.	.																								.
Template Sequence		T	S	T	T	V	K	A	A	C	W	W	A	G	I	K	Q	E	D	G	I	P	Y	N	P	Q	S	Q	G	V	I	E	S	M	N	K	E	L	K	K	I	I	G	Q	V	R	D	Q	A	E	.	.	H	L	K	T	A	V	Q	M	A	V	F	I	H	N	H	K	R	K	G	Y	S	A	G	.	E	R	I	V	D
Template Known Secondary structure														T									S	S	T																					G	G	G		S	.	.	S																B				B			.
Template Predicted Secondary structure																																																			.	.																								.
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170			.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.
		201	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	I	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		203	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions