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Job DescriptionP0CF60
Confidence99.57%DateWed Jan 25 15:20:36 GMT 2012
Rank16Aligned Residues158
% Identity12%Templatec3l2tB_
PDB info PDB header:recombination/dnaChain: B: PDB Molecule:integrase; PDBTitle: crystal structure of the prototype foamy virus (pfv) intasome in2 complex with magnesium and mk0518 (raltegravir)
Resolution2.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   38.40.........50.........60.........70.........80.........90.........100.........110.......
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Query Sequence  AVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNG
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Template Sequence  RPQKPFDKFFIDYIGPLPPSQGYLYVLVVVDGMTGFTWLYPTK. . APSTSATVKSLNVL. . . . . . . TSIAIPKVIHSDQG
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TTS


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BTTB
TTT

S..SSS.......TTT


S


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   117..120.........130.........140.........150......... 160.........170... ......180.......
 
   118.120.........130.........140.........150.........160.........170.........180.........190.......
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Query Sequence  SCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRS
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Template Sequence  AAFTSSTFAEWAKERGIHLEFSTPYHPQSSGKVERKNSDI. KRLLTKLLVGRPTKWYDLLPVVQLALNNT. YSPVLK. YT
Template Known Secondary structure  STT


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.TTSTT
GGGGTS.

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   188.190.........200.........210.........220....... ..230.........240.........250...... ...260.. ..
 
   198.200.......
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Query Sequence  PREYLRQRAC
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Template Sequence  PHQLLFGIDS
Template Known Secondary structure  SS

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   265....270....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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