Job Description P0CF60 Confidence 99.73% Date Wed Jan 25 15:20:36 GMT 2012 Rank 8 Aligned Residues 144 % Identity 18% Template c1ex4A_ PDB info PDB header:viral protein Chain: A: PDB Molecule:integrase; PDBTitle: hiv-1 integrase catalytic core and c-terminal domain Resolution 2.80 Å

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		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	S	N	Q	R	W	C	S	D	G	F	E	F	C	C	D	N	G	E	R	L	R	V	T	F	A	L	D	C	C	D	R	E	A	L	H	W	A	V	T	T	G	G	F	N	S	E	T	V	Q	D	V	M	L	G	A	V	E	R	R	F	G	N	D	L	P	S	S	P	V	E	W	L	T	D	N	G	S	C
Query Conservation
Alig confidence						.										.	.	.	.	.																									.	.																.	.	.	.	.	.	.
Template Conservation						.										.	.	.	.	.																									.	.																.	.	.	.	.	.	.
Template Sequence		S	S	P	G	.	I	W	Q	L	D	C	T	H	L	.	.	.	.	.	E	G	K	V	I	L	V	A	V	H	V	A	S	G	Y	I	E	A	E	V	I	P	A	E	.	.	T	G	Q	E	T	A	Y	F	L	L	K	L	A	G	R	.	.	.	.	.	.	.	W	P	V	K	T	I	H	T	D	N	G	S	N
Template Known Secondary structure			G	G	G	.										.	.	.	.	.	T	T									T	T	T									S	S	S	.	.	S	T	T													.	.	.	.	.	.	.	S
Template Predicted Secondary structure						.										.	.	.	.	.																									.	.																.	.	.	.	.	.	.
Template SS confidence
		56	.	.	.		60	.	.	.	.	.	.	.	.						.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.			.	.	.	.	.	.	.	100	.	.	.	.	.	.	.								.	.	110	.	.	.	.	.	.	.	.	.	120
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	R	A	N	E	T	R	Q	F	A	R	M	L	G	L	E	P	K	N	T	A	V	R	S	P	E	S	N	G	I	A	E	S	F	V	K	T	I	K	R	D	Y	I	S	I	M	P	K	P	D	G	L	T	A	A	K	N	L	A	E	A	F	E	H	Y	N	E	W	H	P	H	S	A	L	G	Y	R	S	P	R
Query Conservation
Alig confidence																			.	.	.																															.	.																	.
Template Conservation																			.	.	.																															.	.																	.
Template Sequence		F	T	G	A	T	V	R	A	A	C	D	W	A	G	I	K	Q	.	.	.	E	D	G	I	P	Q	S	Q	G	V	V	E	S	M	N	K	E	L	K	K	I	I	G	Q	V	R	D	Q	A	E	.	.	H	L	K	T	A	V	Q	M	A	V	F	I	H	N	K	K	.	R	K	G	G	I	G	G	Y	S	A	G
Template Known Secondary structure												T	T	T	T				.	.	.							S	S																		G	G	G		S	.	.	S	S															.		S	S	S	S	S
Template Predicted Secondary structure																			.	.	.																															.	.																	.
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.				.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.		.	.	.	.	.	.	190	.	.	.	.
		200	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Y	L	R	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	R	I	V	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		198	.	200	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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