Job Description P0CF60 Confidence 99.82% Date Wed Jan 25 15:20:36 GMT 2012 Rank 3 Aligned Residues 166 % Identity 15% Template c1c0mA_ PDB info PDB header:transferase Chain: A: PDB Molecule:protein (integrase); PDBTitle: crystal structure of rsv two-domain integrase Resolution 2.53 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	A	V	K	E	S	N	Q	R	W	C	S	D	G	F	E	F	C	C	D	N	G	E	R	L	R	V	T	F	A	L	D	C	C	D	R	E	A	L	H	W	A	V	T	T	G	G	F	N	S	E	T	V	Q	D	V	M	L	G	A	V	E	R	R	F	G	N	D	L	P	S	S	P	V	E	W	L	T	D
Query Conservation
Alig confidence																					.																						.																							.	.	.	.	.	.	.
Template Conservation																					.																						.																							.	.	.	.	.	.	.
Template Sequence		N	P	R	G	L	G	P	L	Q	I	W	Q	T	D	F	T	L	E	P	.	R	M	A	P	R	S	W	L	A	V	T	V	D	T	A	S	S	A	I	V	V	.	T	Q	H	G	R	V	T	S	V	A	V	Q	H	H	W	A	T	A	I	A	V	L	.	.	.	.	.	.	.	G	R	P	K	A	I	K	T	D
Template Known Secondary structure			S			S	S	T	T	S										G	.	G	G		S	S									T	T	T						.				S	S																		.	.	.	.	.	.	.				S
Template Predicted Secondary structure																					.																						.																							.	.	.	.	.	.	.
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.								.	.	.	.	.	.	.	120	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.							.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.
Query Sequence		N	G	S	C	Y	R	A	N	E	T	R	Q	F	A	R	M	L	G	L	E	P	K	N	T	A	V	R	S	P	E	S	N	G	I	A	E	S	F	V	K	T	I	K	R	D	Y	I	S	I	M	P	K	.	.	.	.	.	.	P	D	G	L	T	A	A	K	N	L	A	E	A	F	E	H	Y	N	E	W	H	P
Query Conservation																																																						.	.	.	.	.	.
Alig confidence																																																						.	.	.	.	.	.																			.	.
Template Conservation																																																																														.	.
Template Sequence		N	G	S	C	F	T	S	K	S	T	R	E	W	L	A	R	W	G	I	A	H	T	T	G	I	P	G	N	S	Q	G	Q	A	M	V	E	R	A	N	R	L	L	K	D	R	I	R	V	L	A	E	G	D	G	F	M	K	R	I	P	T	S	K	Q	G	E	L	L	A	K	A	M	Y	A	L	N	.	.	H	K
Template Known Secondary structure		S						S											T								S	S	S	S	T	T	S																					T	T		S	S	S			G	G	G														.	.	S	S
Template Predicted Secondary structure																																																																														.	.
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.			.	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	S	A	L	G	Y	R	S	P	R	E	Y	L	R	Q	R	A	C	N	G	L	S	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	R	G	E	N	T	K	T	P	I	Q	K	H	W	R	P	T	V	L	T	E	G	P
Template Known Secondary structure				S	S		S	S								S					S	S
Template Predicted Secondary structure
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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