Job Description P0CF60 Confidence 99.70% Date Wed Jan 25 15:20:36 GMT 2012 Rank 9 Aligned Residues 161 % Identity 16% Template c1bcoA_ PDB info PDB header:transposase Chain: A: PDB Molecule:bacteriophage mu transposase; PDBTitle: bacteriophage mu transposase core domain Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.							.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure																				.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.
Query Sequence		A	V	K	E	S	N	Q	R	W	C	S	D	G	F	E	F	C	C	.	.	.	.	.	.	D	N	G	E	R	L	R	V	T	F	A	L	D	C	C	D	R	E	A	L	H	W	A	V	T	T	G	G	F	N	S	E	T	V	Q	D	V	M	L	G	A	V	E	R	R	F	G	N	D	L	P	S	S	P	V	E
Query Conservation																				.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.																																																.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.
Template Sequence		E	H	L	D	A	M	Q	W	I	N	G	D	G	Y	L	H	N	V	F	V	R	W	F	N	G	D	V	I	R	P	K	T	W	F	W	Q	D	V	K	T	R	K	I	L	G	W	R	C	D	V	S	E	N	I	D	S	I	R	L	S	F	M	D	V	V	T	R	Y	G	I	P	.	.	.	.	.	E	D	F	H
Template Known Secondary structure						T	T	T										S	B					T	T	S													T	T	T										S	S																					.	.	.	.	.	S	S
Template Predicted Secondary structure																																																																									.	.	.	.	.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.						.	330	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.																		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.				150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.														.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.														.	.	.	.	.	.	.	.	.
Query Sequence		W	L	T	D	N	G	S	C	Y	R	A	N	E	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Q	F	A	R	M	L	G	L	E	P	K	N	T	A	V	R	S	P	E	S	N	G	I	.	.	.	A	E	S	F	V	K	T	I	K	R	D	Y	I	.	.	.	.	.	.	.	.	.
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.														.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.														.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	T	I	D	N	T	R	G	A	A	N	K	W	L	T	G	G	A	P	N	R	Y	R	F	K	V	K	E	D	D	P	K	G	L	F	L	L	M	G	A	K	M	H	W	T	S	V	V	A	G	K	G	W	G	Q	A	K	P	V	E	R	A	F	G	V	G	G	L	E	E	Y	V	D	K	H	P	A	L	A	G
Template Known Secondary structure							T	T	S	T	T	T	T	T	T	S				T	T	T	T	B	S		B													T						S	S	S		T	T						S	S		S	S	G	G	G	S	G	G	G	G	G	G	T	T	T	T		G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
							163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.					.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																										.	.	.	.
Query SS confidence		.	.	.	.	.																										.	.	.	.
Query Sequence		.	.	.	.	.	S	I	M	P	K	P	D	G	L	T	A	A	K	N	L	A	E	A	F	E	H	Y	N	E	W	.	.	.	.	H	P	H	S	A	L	G	Y	R	S	P	R	E	Y	L	R	Q
Query Conservation		.	.	.	.	.																										.	.	.	.
Alig confidence		.	.	.	.	.																										.	.	.	.								.
Template Conservation																																											.
Template Sequence		A	Y	T	G	P	Y	G	D	R	A	V	D	A	E	L	F	L	K	T	L	A	E	G	V	A	M	F	N	A	R	T	G	R	E	T	E	M	C	G	G	K	.	L	S	F	D	D	V	F	E	R
Template Known Secondary structure		T	B					T	T	T																										S	T	T	T	T	T	T	.
Template Predicted Secondary structure																																											.
Template SS confidence
		413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.		.	.	.	.	.	.	460	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions