Phyre 2 alignment of P0ABK5 with d1tyza

Job Description P0ABK5
Confidence 100.00% Date Wed Jan 25 15:20:22 GMT 2012

Rank 37 Aligned Residues 304

% Identity 19% Template d1tyza_

SCOP info Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes

Resolution 2.00

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.						.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.				.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.																		.	.	.
Query SS confidence																						.	.	.	.	.																		.	.	.
Query Sequence	I	F	E	D	N	S	L	T	I	G	H	T	P	L	V	R	L	N	R	I	G	.	.	.	.	.	N	G	R	I	L	A	K	V	E	S	R	N	P	S	F	S	V	.	.	.	K	C	R	I	G	A	N	M	I	W	D	A	E	K	R	G	V	L	K	P	G	V	E	L	V	E	P	T	S	G	N	T	G	I
Query Conservation																						.	.	.	.	.																		.	.	.
Alig confidence																						.	.	.	.	.																		.	.	.																				.	.
Template Conservation																																																																		.	.
Template Sequence	R	F	P	R	Y	P	L	T	F	G	P	T	P	I	Q	P	L	A	R	L	S	K	H	L	G	G	K	V	H	L	Y	A	K	R	E	D	C	N	S	G	L	A	F	G	G	N	K	T	R	K	L	E	Y	L	I	P	E	A	L	A	Q	G	C	D	T	.	.	L	V	S	I	G	G	I	Q	S	N	Q	T	R
Template Known Secondary structure	G	S						S	S	S	S													T	T	S	S	S							G	G	G	S		S	S	T	T																		T	T				.	.							T	T
Template Predicted Secondary structure																																																																		.	.
Template SS confidence
	5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.			70	.	.	.	.	.	.	.	.	.	80	.	.

	76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100									.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.
Query Sequence	A	L	A	Y	V	A	A	A	R	G	Y	K	L	T	L	T	M	P	E	T	M	S	I	E	R	.	.	.	.	.	.	.	.	R	K	L	L	K	A	L	G	A	N	L	V	L	T	E	G	A	K	G	M	K	G	A	I	Q	K	A	E	E	I	V	A	S	N	P	E	K	Y	L	L	L	Q	Q	F	S	N	P
Query Conservation																										.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.																	.	.	.	.
Template Conservation																																																		.	.	.	.
Template Sequence	Q	V	A	A	V	A	A	H	L	G	M	K	C	V	L	V	Q	E	N	W	V	N	Y	S	D	A	V	Y	D	R	V	G	N	I	Q	M	S	R	I	L	G	A	D	V	R	L	V	P	D	.	.	.	.	R	S	W	E	D	A	L	E	S	V	R	A	A	G	G	K	P	Y	A	I	P	A	G	C	S	D	H
Template Known Secondary structure										T											S	S				T	T	T	T	T	S									T	T									.	.	.	.													T	T								G	G	G	T	S	S
Template Predicted Secondary structure																																																		.	.	.	.
Template SS confidence
	83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.					.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.

	148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.				.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure																				.	.	.
Query SS confidence																				.	.	.
Query Sequence	A	N	P	E	I	H	E	K	T	T	G	P	E	I	W	E	D	T	D	.	.	.	G	Q	V	D	V	F	I	A	G	V	G	T	G	G	T	L	T	G	V	S	R	Y	I	K	G	T	K	G	K	T	D	L	I	S	V	A	V	E	P	T	D	S	P	V	I	A	Q	A	L	A	G	E	E	I	K	P	G	P
Query Conservation																				.	.	.
Alig confidence																				.	.	.																																	.	.
Template Conservation																																																							.	.
Template Sequence	P	L	G	G	L	G	F	V	G	F	A	E	E	V	R	A	Q	E	A	E	L	G	F	K	F	D	Y	V	V	V	C	S	V	T	G	S	T	Q	A	G	M	V	V	G	F	A	A	D	G	R	A	D	R	V	.	.	I	G	V	D	A	S	A	K	P	A	Q	T	R	E	Q	I	T	R	I	A	R	Q	T	A
Template Known Secondary structure	T	T	T	T	T																	T	S			S							S	S	S												T	T	T		G	G	G		.	.						S	S
Template Predicted Secondary structure																																																							.	.
Template SS confidence
	166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.			220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.

	225	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.		.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290		.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure						.																																													.																		.
Query SS confidence						.																																													.																		.
Query Sequence	H	K	I	Q	G	.	I	G	A	G	F	I	P	A	N	L	D	L	K	L	V	D	K	V	I	G	I	T	N	E	E	A	I	S	T	A	R	R	L	M	E	E	E	G	I	L	A	G	I	S	.	S	G	A	A	V	A	A	A	L	K	L	Q	E	D	E	S	F	.	T	N	K	N	I	V	V	I	L	P	S
Query Conservation						.																																													.																		.
Alig confidence						.																																													.																		.
Template Conservation
Template Sequence	E	K	V	G	L	E	R	D	I	M	R	A	D	V	V	L	D	E	R	F	A	G	P	E	Y	G	L	P	N	E	G	T	L	E	A	I	R	L	C	A	R	T	E	G	M	L	T	D	P	V	Y	E	G	K	S	M	H	G	M	I	E	M	V	R	N	G	E	F	P	E	G	S	R	V	L	Y	A	H	L	G
Template Known Secondary structure				T		S	S				G	G	G						T	T	S		S	B	T	T	B																	S					T	T	T														T	T		S		T	T
Template Predicted Secondary structure
Template SS confidence
	244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.

	302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	G	E	R	Y	L	S	T	A	L	F	A	D	L	F	T	E
Query Conservation
Alig confidence			.	.	.
Template Conservation			.	.	.
Template Sequence	G	V	.	.	.	P	A	L	N	G	Y	S	F	I	F	R	D
Template Known Secondary structure		G	.	.	.	G	G	G	G	G	G	T	G	G	G	T	T
Template Predicted Secondary structure			.	.	.
Template SS confidence
	324	.				.	.	.	.	330	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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