Phyre 2 alignment of P0ABK5 with d1f2da

Job Description P0ABK5
Confidence 100.00% Date Wed Jan 25 15:20:22 GMT 2012

Rank 36 Aligned Residues 302

% Identity 21% Template d1f2da_

SCOP info Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes

Resolution 2.00

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.						.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.				.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.																			.	.	.
Query SS confidence																				.	.	.	.	.																			.	.	.
Query Sequence	F	E	D	N	S	L	T	I	G	H	T	P	L	V	R	L	N	R	I	.	.	.	.	.	G	N	G	R	I	L	A	K	V	E	S	R	N	P	S	F	S	V	.	.	.	K	C	R	I	G	A	N	M	I	W	D	A	E	K	R	G	V	L	K	P	G	V	E	L	V	E	P	T	S	G	N	T	G	I	A
Query Conservation																				.	.	.	.	.																			.	.	.
Alig confidence																				.	.	.	.	.																			.	.	.																				.	.
Template Conservation																																																																	.	.
Template Sequence	F	A	K	Y	P	L	T	F	G	P	S	P	I	S	N	L	N	R	L	S	Q	H	L	G	S	K	V	N	V	Y	A	K	R	E	D	C	N	S	G	L	A	F	G	G	N	K	L	R	K	L	E	Y	I	V	P	D	I	V	E	G	D	Y	T	H	.	.	L	V	S	I	G	G	R	Q	S	N	Q	T	R	M
Template Known Secondary structure	S						S	S	S	S													T	T	T		S							G	G	G	S		S	S	T	T									T	T	T							S			S		.	.							T	T
Template Predicted Secondary structure																																																																	.	.
Template SS confidence
	6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.			70	.	.	.	.	.	.	.	.	.	80	.	.	.

	77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.												.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.				120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Query Sequence	L	A	Y	V	A	A	A	R	G	Y	K	L	T	L	T	M	P	E	T	M	S	I	E	R	R	K	.	.	.	.	.	.	.	.	.	.	.	L	L	K	A	L	G	A	N	L	V	L	T	E	G	A	K	G	.	.	.	M	K	G	A	I	Q	K	A	E	E	I	V	A	S	N	P	E	K	Y	L	L	L	Q
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Template Conservation
Template Sequence	V	A	A	L	A	A	K	L	G	K	K	C	V	L	I	Q	E	D	W	V	P	I	P	E	A	E	K	D	V	Y	N	R	V	G	N	I	E	L	S	R	I	M	G	A	D	V	R	V	I	E	D	G	F	D	I	G	M	R	K	S	F	A	N	A	L	Q	E	L	E	D	A	G	H	K	P	Y	P	I	P	A
Template Known Secondary structure									T											S				G	G	G	T	T	T	T	T	T	S									T	T												S	S															T	T								G
Template Predicted Secondary structure
Template SS confidence
	84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.

	143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.				.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.
Query SS confidence																								.	.	.
Query Sequence	Q	F	S	N	P	A	N	P	E	I	H	E	K	T	T	G	P	E	I	W	E	D	T	.	.	.	D	G	Q	V	D	V	F	I	A	G	V	G	T	G	G	T	L	T	G	V	S	R	Y	I	K	G	T	K	G	K	T	D	L	I	S	V	A	V	E	P	T	D	S	P	V	I	A	Q	A	L	A	G	E	E
Query Conservation																								.	.	.
Alig confidence																								.	.	.																																		.	.
Template Conservation																																																												.	.
Template Sequence	G	C	S	E	H	K	Y	G	G	L	G	F	V	G	F	A	D	E	V	I	N	Q	E	V	E	L	G	I	K	F	D	K	I	V	V	C	C	V	T	G	S	T	T	A	G	I	L	A	G	M	A	Q	Y	G	R	Q	D	D	V	.	.	I	A	I	D	A	S	F	T	S	E	K	T	K	E	Q	T	L	R	I
Template Known Secondary structure	G	G	T	T	S	T	T	T	T	T																	T				S							S	S	S											G	G	G	T		G	G	G		.	.						S	S
Template Predicted Secondary structure																																																												.	.
Template SS confidence
	164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.			.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.

	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.		.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.
Query SS confidence																																																							.
Query Sequence	I	K	P	G	P	H	K	I	Q	G	I	G	A	G	F	I	P	A	N	L	D	L	K	L	V	D	K	V	I	G	I	T	N	E	E	A	I	S	T	A	R	R	L	M	E	E	E	G	I	L	A	G	I	S	.	S	G	A	A	V	A	A	A	L	K	L	Q	E	D	E	S	F	T	N	K	N	I	V	V	I
Query Conservation																																																							.
Alig confidence									.																																														.
Template Conservation									.
Template Sequence	A	N	N	T	A	K	L	I	.	G	V	E	H	E	F	K	D	F	T	L	D	T	R	F	A	Y	P	C	Y	G	V	P	N	E	G	T	I	E	A	I	R	T	C	A	E	Q	E	G	V	L	T	D	P	V	Y	E	G	K	S	M	Q	G	L	I	A	L	I	K	E	D	Y	F	K	P	G	A	N	V	L	Y
Template Known Secondary structure									.	T						S							T	T	S	T	T	B	T	T	B																	S					T	T	T														T	T		S		T	T
Template Predicted Secondary structure									.
Template SS confidence
	242	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320

	299	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	P	S	S	G	E	R	Y	L	S	T	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence	V	H	L	G	G	A	P	A	L	S	A	Y	S
Template Known Secondary structure						G	G	G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
	321	.	.	.	.	.	.	.	.	330	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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