Job Description P0ABK5 Confidence 100.00% Date Wed Jan 25 15:20:22 GMT 2012 Rank 25 Aligned Residues 308 % Identity 20% Template c3r0zA_ PDB info PDB header:lyase Chain: A: PDB Molecule:d-serine dehydratase; PDBTitle: crystal structure of apo d-serine deaminase from salmonella2 typhimurium Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.												.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50						.	.	.	.	.	.	.	.	.	60	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.														.														.	.	.	.	.												.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.														.														.	.	.	.	.												.	.
Query Sequence		M	S	K	I	F	E	D	N	S	L	T	I	G	H	T	P	L	V	R	L	N	R	I	G	.	.	.	.	.	.	.	.	.	.	.	N	G	R	I	L	A	K	V	E	S	R	N	P	.	S	F	S	V	K	C	R	I	G	A	N	M	I	.	.	.	.	.	W	D	A	E	K	R	G	V	L	K	P	.	.
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.														.														.	.	.	.	.												.	.
Alig confidence									.																	.	.	.	.	.	.	.	.	.	.	.														.														.	.	.	.	.												.	.
Template Conservation									.
Template Sequence		L	A	K	A	F	P	Q	.	T	G	G	M	I	E	S	D	V	V	A	I	P	A	M	Q	K	R	L	E	K	E	Y	G	Q	T	I	N	G	E	M	L	L	K	K	D	S	H	L	A	I	S	G	S	I	K	A	R	G	G	I	Y	E	V	L	T	H	A	E	K	L	A	L	E	A	G	L	L	T	T	D	D
Template Known Secondary structure						S	T	T	.																													S							G	G	G		T	T	T	S	B	T																					T	S			T	T	S
Template Predicted Secondary structure									.
Template SS confidence
		61	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
																	62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	E	L	V	E	P	T	S	G	N	T	G	I	A	L	A	Y	V	A	A	A	R	G	Y	K	L	T	L	T	M	P	E	T	M	S	I	E	R	R	K	L	L	K	A	L	G	A	N	L	V	L	T	E	G	A	K	G	M	K	G	A	I	Q	K
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																								.	.
Template Conservation																																																																								.	.
Template Sequence		D	Y	S	V	L	L	S	P	E	F	K	Q	F	F	S	Q	Y	S	I	A	V	G	S	T	G	N	L	G	L	S	I	G	I	M	S	A	C	I	G	F	K	V	T	V	H	M	S	A	D	A	R	A	W	K	K	A	K	L	R	S	H	G	V	T	V	V	E	Y	E	D	.	.	D	Y	G	V	A	V	E	Q
Template Known Secondary structure			G	G	G	G	G	S								T	T	S							S	S														T									T	T	S											T	T							S	S	.	.		T	T
Template Predicted Secondary structure																																																																								.	.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.			.	.	.	.	.	.	.	220
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.									.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.
Query Sequence		A	E	E	I	V	A	S	N	P	E	K	Y	L	L	L	Q	Q	F	S	N	P	A	N	P	E	I	H	E	K	T	T	G	P	E	I	W	E	D	T	.	.	.	.	.	.	.	.	D	G	Q	V	D	V	F	I	A	G	V	G	T	G	G	T	L	T	G	V	S	R	Y	I	K	G	T	K	G	K	T	D	L
Query Conservation																																									.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.																					.	.	.	.	.	.	.	.																																.
Template Conservation															.	.	.	.	.	.																																																												.
Template Sequence		G	R	K	A	A	Q	S	D	P	N	C	F	F	.	.	.	.	.	.	I	S	R	T	L	F	L	G	Y	A	V	A	G	Q	R	L	K	A	Q	F	A	Q	Q	G	R	V	V	D	A	S	H	P	L	F	V	Y	L	P	C	G	V	G	G	G	P	G	G	V	A	F	G	L	K	L	A	F	G	D	N	.	V
Template Known Secondary structure								T		T	T				.	.	.	.	.	.											T													T				S	S	S	S									S	S	S															G	G	G	.
Template Predicted Secondary structure															.	.	.	.	.	.																																																												.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.							.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.		.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.										.	.	.	.	.	230	.	.	.	.	.				.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.												.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.												.	.	.
Query Sequence		I	S	V	A	V	E	P	T	D	S	P	V	I	A	Q	A	L	A	G	E	E	I	K	P	G	P	.	.	.	.	.	.	.	.	.	H	K	I	Q	G	I	G	A	G	F	I	.	.	.	P	A	N	L	D	L	K	L	V	D	K	V	I	G	I	T	N	E	E	A	I	S	T	A	R	R	L	M	E	E	E
Query Conservation																												.	.	.	.	.	.	.	.	.												.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.												.	.	.
Template Conservation
Template Sequence		H	C	F	F	A	E	P	T	H	S	P	C	M	L	L	G	V	Y	T	G	L	H	D	A	I	S	V	Q	D	I	G	I	D	N	L	T	A	A	D	G	L	A	V	G	R	A	S	G	F	V	G	R	A	M	E	R	L	L	D	G	L	Y	T	L	D	D	Q	T	M	Y	D	M	L	G	W	L	A	Q	E	E
Template Known Secondary structure									T	T											S		G	G	G			S	T	T	T	T						S		G	G	G			S	S										G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.												.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	I	L	A	G	I	S	S	G	A	A	V	A	A	A	L	K	L	Q	E	.	.	.	.	.	.	.	.	.	.	.	D	E	S	F	T	N	K	N	I	V	V	I	L	P	S	S	G	E	R	Y	L	S	T	A	L	F	A	D	L	F	T	E	K	E
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.																			.	.
Template Conservation																																																			.	.
Template Sequence		G	I	R	L	E	P	S	A	L	A	G	M	A	G	P	Q	R	I	C	A	S	V	A	Y	Q	Q	R	H	G	F	S	Q	T	Q	L	G	N	A	T	H	L	V	W	A	T	G	G	G	M	.	.	V	P	E	D	E	M	E	Q	Y	L	A	K	G	R
Template Known Secondary structure							G	G	G	G	G	G	G	G															T	T								T									B		T	T	.	.											T	T
Template Predicted Secondary structure																																																			.	.
Template SS confidence
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.			.	.	.	430	.	.	.	.	.	.	.	.	.	440

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions