Job Description P0ABK5 Confidence 100.00% Date Wed Jan 25 15:20:22 GMT 2012 Rank 34 Aligned Residues 266 % Identity 27% Template c2o2jA_ PDB info PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase beta chain; PDBTitle: mycobacterium tuberculosis tryptophan synthase beta chain2 dimer (apoform) Resolution 2.56 Å

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		3	.	.	.	.	.	.	10	.		.	.	.		.	.	.	.	.	20	.	.	.	.					.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure											.				.											.	.	.	.
Query SS confidence											.				.											.	.	.	.
Query Sequence		K	I	F	E	D	N	S	L	T	.	I	G	H	.	T	P	L	V	R	L	N	R	I	G	.	.	.	.	N	G	R	I	L	A	K	V	E	S	R	N	P	S	F	S	V	K	C	R	I	G	A	N	M	I	W	D	A	E	K	R	G	V	L	K	P	G	V	E	L	V	E	P	T	S	G	N	T	G	I	A
Query Conservation											.				.											.	.	.	.
Alig confidence											.				.											.	.	.	.																																					.	.	.
Template Conservation																																																																		.	.	.
Template Sequence		D	D	L	D	R	L	Q	A	N	Y	A	G	R	P	S	P	L	Y	E	A	T	R	L	S	Q	H	A	G	S	A	R	I	F	L	K	R	E	D	L	N	H	T	G	S	H	K	I	N	N	V	L	G	Q	A	L	L	A	R	R	M	G	K	T	R	.	.	.	V	I	A	E	T	G	A	G	Q	H	G	V	A
Template Known Secondary structure									T	T	T	S	S		S							T	T	T	G	G	G	T	T	T								G	G	G			T	T																	T	T				.	.	.						S	S	S
Template Predicted Secondary structure																																																																		.	.	.
Template SS confidence
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.				120	.	.	.	.	.	.	.	.	.	130	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.				.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140						.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.																					.																										.	.	.	.	.
Query SS confidence																					.	.	.																					.																										.	.	.	.	.
Query Sequence		L	A	Y	V	A	A	A	R	G	Y	K	L	T	L	T	M	P	E	T	.	.	.	M	S	I	E	R	R	K	L	L	K	A	L	G	A	N	L	V	L	T	E	.	G	A	K	G	M	K	G	A	I	Q	K	A	E	E	I	V	A	S	N	P	E	K	Y	L	L	.	.	.	.	.	L	Q	Q	F	S	N	P
Query Conservation																					.	.	.																					.																										.	.	.	.	.
Alig confidence																					.	.	.																					.																										.	.	.	.	.
Template Conservation
Template Sequence		T	A	T	A	C	A	L	L	G	L	D	C	V	I	Y	M	G	G	I	D	T	A	R	Q	A	L	N	V	A	R	M	R	L	L	G	A	E	V	V	A	V	Q	T	G	S	K	T	L	K	D	A	I	N	E	A	F	R	D	W	V	A	N	A	D	N	T	Y	Y	C	F	G	T	A	A	G	P	H	P	F	P
Template Known Secondary structure										T														S	S	T	T								T	T								S	S	S		S																T	T	T								S	S	S
Template Predicted Secondary structure
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.					.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure																				.	.	.	.
Query SS confidence																				.	.	.	.
Query Sequence		A	N	P	E	I	H	E	K	T	T	G	P	E	I	W	E	D	T	.	.	.	.	D	G	Q	V	D	V	F	I	A	G	V	G	T	G	G	T	L	T	G	V	S	R	Y	I	K	G	T	K	G	K	T	D	L	I	S	V	A	V	E	P	T	D	S	P	V	I	A	Q	A	L	A	G	E	E	I	K	P	G
Query Conservation																				.	.	.	.
Alig confidence																				.	.	.	.																											.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	M	V	R	D	F	Q	R	I	I	G	M	E	A	R	V	Q	I	Q	G	Q	A	G	R	L	P	D	A	V	V	A	C	V	G	G	G	S	N	A	I	G	I	F	H	A	F	L	D	.	.	.	D	P	G	V	R	L	V	G	F	E	A	A	G	R	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							G	G	G															S	S			S							S	S		T	T	S	G	G	G	S	G	G	G	T	T	.	.	.		T	T	S												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																		.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260				.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	H	K	I	Q	G	I	G	A	G	F	I	P	A	N	L	D	L	K	L	V	D	K	V	I	G	I	T	N	E	E	A	I	S	T	A	R	R	L	M	E	E	E	G	I	L	A	G	I	S	S	G	A	A	V	A	A	A	L	K	L	Q	E	D	E	S	F	T	N	K	N	I	V	V	I	L	P	S	S	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Y	R	P	I	T	D	S	E	A	M	D	A	F	G	L	L	C	R	M	E	G	I	I	P	A	I	E	S	A	H	A	V	A	G	A	L	K	L	G	V	E	L	G	.	R	G	A	V	I	V	V	N	L	S	G	R	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					S																								.	T	T									S		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.
Template SS confidence
																								337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380		.	.	.	.	.	.	.	.	.	390	.	.	.
		304	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	Y	L	S	T	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	K	D	V	E	T	A	A
Template Known Secondary structure		S	S
Template Predicted Secondary structure
Template SS confidence
		394	.	.	.	.	.	400	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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