 |
Job Description | P0ABK5 | Confidence | 35.28% | Date | Wed Jan 25 15:20:22 GMT 2012 |
Rank | 114 | Aligned Residues | 102 |
% Identity | 15% | Template | c2gcgB_ |
PDB info |
PDB header:oxidoreductase | Chain: B: PDB Molecule:glyoxylate reductase/hydroxypyruvate reductase; |
PDBTitle: ternary crystal structure of human glyoxylate2 reductase/hydroxypyruvate reductase
|
Resolution | 2.20 Å |
|
 |
  |   |
57 | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | V | L | K | P | G | V | E | L | V | E | P | T | S | G | N | T | G | I | A | L | A | Y | V | A | A | A | R | G | Y | K | L | T | L | T | M | P | E | T | M | S | I | E | R | R | K | L | L | K | A | L | G | A | N | L | V | L | T | E | G | A | K | G | M | K | G | A | I | Q | K | A | E | E | I | V | A | S | N | P | E |
Query Conservation |   |
|   |   |   |   |   |   |   |
|
|   |   |
|
|
|
|   |
|   |
|   |
|   |   |
|   |   |   |
|
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
Template Conservation |   |
  |   |   |
|   |
|   |   |
|
|
|
|
|   |
|   |
|
|   |   |
|
|   |   |
|   |
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   | . | . | . |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . |   |
|   |
|
|
|   |   |   | . | . | . | . | . | . | . | . | . |
Template Sequence |   |
G | Y | G | L | T | Q | S | T | V | G | I | I | G | L | G | R | I | G | Q | A | I | A | R | R | L | K | P | F | G | V | Q | R | F | L | Y | T | G | R | Q | P | R | P | E | E | . |
. |
. |
A | A | E | F | Q | A | E | F | V | . |
. |
. |
. |
. |
. |
S | T | P | E | L | A | A | Q | S | . |
. |
. |
. |
. |
. |
. |
. |
. |
Template Known Secondary structure |   |
|
|
|
| T | T |
|  |  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  |  | G | G | G | T |
|
|  |  |  |  |  | S | S | S |
|
|  |  |  | . | . | . |  | G | G | G | T |
|  |  |
| . | . | . | . | . | . |
|  |  |  |  |  |  |  |
| . | . | . | . | . | . | . | . | . |
Template Predicted Secondary structure |   |
|  |  |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  | . | . | . |  |  |
|
|
|  |  |  |
| . | . | . | . | . | . |
|  |  |  |  |  |
|
|
| . | . | . | . | . | . | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
148 | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | |
|
|
. | . | . | . | . | . | . | . | 200 | |
|
|
|
|
|
. | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
  |
  |   |
137 | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . |
Predicted Secondary structure |   |
|  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | Y | L | L | L | Q | Q | F | S | N | P | A | N | P | E | I | H | E | K | T | T | G | P | E | I | W | E | D | T | D | G | Q | V | D | V | F | I | A | G | V | G | T | G | G | T | L |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|   |   |
|
|   |   |   |   |
|   |
|
|   |   |   |
|   |
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |   |   |
|
|
|
|   |   |
| . | . | . | . |   |   |
|
|   |   |   |   |
|   |   |
|
| . | . |   |
|
|   |
|
|
|   |   |
|
|   |
|
|
Template Sequence |   |
D | F | I | V | V | A | C | S | L | T | P | A | T | . |
. |
. |
. |
E | G | L | C | N | K | D | F | F | Q | K | M | K | . |
. |
E | T | A | V | F | I | N | I | S | R | G | D | V | V |
Template Known Secondary structure |   |
S |  |  |  |  |
|
|
|
|
| T | T | T | . | . | . | . | T | T |
| B | S |  |  |  |  |  |  | S |
| . | . | T | T |
|  |  |  |  |
| S |
| G | G | G | B |
Template Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|  |  |  |  |  |  |
|
| . | . |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
210 | . | . | . | . | . | . | . | . | . | 220 | . | . | |
|
|
|
. | . | . | . | . | . | . | 230 | . | . | . | . | . | |
|
. | . | . | . | 240 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|