Job Description P0ABK5 Confidence 100.00% Date Wed Jan 25 15:20:22 GMT 2012 Rank 27 Aligned Residues 299 % Identity 21% Template c1x1qA_ PDB info PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase beta chain; PDBTitle: crystal structure of tryptophan synthase beta chain from thermus2 thermophilus hb8 Resolution 2.50 Å

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		8	.	10	.	.	.	.		.	.	.	.	.	20	.	.	.	.					.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure									.											.	.	.	.
Query SS confidence									.											.	.	.	.
Query Sequence		N	S	L	T	I	G	H	.	T	P	L	V	R	L	N	R	I	G	.	.	.	.	N	G	R	I	L	A	K	V	E	S	R	N	P	S	F	S	V	K	C	R	I	G	A	N	M	I	W	D	A	E	K	R	G	V	L	K	P	G	V	E	L	V	E	P	T	S	G	N	T	G	I	A	L	A	Y	V	A	A
Query Conservation									.											.	.	.	.
Alig confidence									.											.	.	.	.																																					.	.	.
Template Conservation																																																												.	.	.
Template Sequence		L	R	Q	F	A	G	R	P	T	P	L	Y	H	A	K	R	L	S	E	Y	W	G	G	A	Q	V	F	L	K	R	E	D	L	L	H	T	G	A	H	K	I	N	N	T	L	G	Q	A	L	L	A	R	R	X	G	K	R	R	.	.	.	V	I	A	E	T	G	A	G	Q	H	G	V	S	V	A	T	V	A	A
Template Known Secondary structure					T	T			S														T	S	S							G	G	G	S	G	G	G	B	T	T															T				.	.	.						S	S	S
Template Predicted Secondary structure																																																												.	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.				.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.				.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140						.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure											.	.	.																									.																										.	.	.	.	.
Query SS confidence											.	.	.																									.																										.	.	.	.	.
Query Sequence		A	R	G	Y	K	L	T	L	T	.	.	.	M	P	E	T	M	S	I	E	R	R	K	L	L	K	A	L	G	A	N	L	V	L	T	E	.	G	A	K	G	M	K	G	A	I	Q	K	A	E	E	I	V	A	S	N	P	E	K	Y	L	L	.	.	.	.	.	L	Q	Q	F	S	N	P	A	N	P	E	I	H
Query Conservation											.	.	.																									.																										.	.	.	.	.
Alig confidence											.	.	.																									.																										.	.	.	.	.
Template Conservation
Template Sequence		L	F	G	L	E	C	V	V	Y	X	G	E	E	D	V	R	R	Q	A	L	N	V	F	R	X	K	L	L	G	A	E	V	R	P	V	A	A	G	S	R	T	L	K	D	A	T	N	E	A	I	R	D	W	I	T	N	V	R	T	T	F	Y	I	L	G	S	V	V	G	P	H	P	Y	P	X	X	V	R	D	F
Template Known Secondary structure				T														T											T	T								S	T	T	S	S															T	T	T	T								S	S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.					.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.
Query SS confidence														.	.	.	.
Query Sequence		E	K	T	T	G	P	E	I	W	E	D	T	.	.	.	.	D	G	Q	V	D	V	F	I	A	G	V	G	T	G	G	T	L	T	G	V	S	R	Y	I	K	G	T	K	G	K	T	D	L	I	S	V	A	V	E	P	T	D	S	P	V	I	A	Q	A	L	A	G	E	E	I	K	P	G	P	H	K	I	Q	G
Query Conservation														.	.	.	.
Alig confidence														.	.	.	.																										.
Template Conservation																																											.
Template Sequence		Q	S	V	I	G	E	E	V	K	R	Q	S	L	E	L	F	G	R	L	P	D	A	L	I	A	A	V	G	G	G	S	N	A	I	G	L	F	A	P	F	A	.	Y	L	P	E	G	R	P	K	L	I	G	V	E	A	A	G	E	G	L	S	T	G	R	H	A	A	S	I	G	A	G	K	R	G	V	L	H	G
Template Known Secondary structure			T															S	S			S							S	S	S	S											.	T	S		T	T												T	T	S	S	S										T						T	T
Template Predicted Secondary structure																																											.
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
		230										.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure			.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.
Query Sequence		I	.	.	.	.	.	.	.	.	.	G	A	G	F	I	P	A	N	L	D	L	K	L	V	D	K	V	I	G	I	T	N	E	E	A	I	S	T	A	R	R	L	M	E	E	E	G	I	L	A	G	I	S	S	G	A	A	V	A	A	A	L	K	L	Q	E	D	E	S	F	T	N	K	N	I	V	V	I	L	P
Query Conservation			.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.																																																												.
Template Conservation																																																																							.
Template Sequence		S	Y	X	Y	L	L	Y	D	Y	P	G	V	G	P	E	H	S	Y	Y	A	D	A	G	V	A	E	Y	A	S	V	T	D	E	E	A	L	E	G	F	K	L	L	A	R	L	E	G	I	I	P	A	L	E	S	A	H	A	I	A	Y	A	A	K	V	V	P	E	X	D	.	K	D	Q	V	V	V	I	N	L	S
Template Known Secondary structure						B					S	B												T	S																							S			B															T	T	T	S		.	T	T
Template Predicted Secondary structure																																																																							.
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.		.	.	.	.	.	380	.	.	.	.
		301	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	G	E	R	Y	L	S	T	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	R	G	D	K	D	V	T	E	V	X
Template Known Secondary structure		B	B	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions