Job Description P0ABK5 Confidence 100.00% Date Wed Jan 25 15:20:22 GMT 2012 Rank 3 Aligned Residues 311 % Identity 41% Template c1jbqD_ PDB info PDB header:lyase Chain: D: PDB Molecule:cystathionine beta-synthase; PDBTitle: structure of human cystathionine beta-synthase: a unique pyridoxal 5'-2 phosphate dependent hemeprotein Resolution 2.60 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.						.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.
Query SS confidence																								.	.	.	.	.
Query Sequence		K	I	F	E	D	N	S	L	T	I	G	H	T	P	L	V	R	L	N	R	I	G	.	.	.	.	.	N	G	R	I	L	A	K	V	E	S	R	N	P	S	F	S	V	K	C	R	I	G	A	N	M	I	W	D	A	E	K	R	G	V	L	K	P	G	V	E	L	V	E	P	T	S	G	N	T	G	I	A	L
Query Conservation																								.	.	.	.	.
Alig confidence																								.	.	.	.	.
Template Conservation
Template Sequence		K	I	L	P	D	I	L	K	K	I	G	D	T	P	M	V	R	I	N	K	I	G	K	K	F	G	L	K	C	E	L	L	A	K	C	E	F	F	N	A	G	G	S	V	K	D	R	I	S	L	R	M	I	E	D	A	E	R	D	G	T	L	K	P	G	D	T	I	I	E	P	T	S	G	N	T	G	I	G	L
Template Known Secondary structure		S	S		S	S	G	G	G	G	S	S									S					T	T			S							G	G	G	S	T	T	S	B	T																T		S		T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Y	V	A	A	A	R	G	Y	K	L	T	L	T	M	P	E	T	M	S	I	E	R	R	K	L	L	K	A	L	G	A	N	L	V	L	T	E	G	A	K	G	M	K	G	A	I	Q	K	A	E	E	I	V	A	S	N	P	E	K	Y	L	L	L	Q	Q	F	S	N	P	A	N	P	E	I	H	E	K	T	T
Query Conservation
Alig confidence																																																							.	.	.	.	.
Template Conservation																																																							.	.	.	.	.
Template Sequence		A	L	A	A	A	V	R	G	Y	R	C	I	I	V	M	P	E	K	M	S	S	E	K	V	D	V	L	R	A	L	G	A	E	I	V	R	T	P	T	E	S	H	V	G	V	A	W	R	L	K	N	E	I	.	.	.	.	.	P	N	S	H	I	L	D	Q	Y	R	N	A	S	N	P	L	A	H	Y	D	T	T
Template Known Secondary structure									T									S													T	T																						S	.	.	.	.	.	T	T						T	T	T		T									T
Template Predicted Secondary structure																																																							.	.	.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.						.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	P	E	I	W	E	D	T	D	G	Q	V	D	V	F	I	A	G	V	G	T	G	G	T	L	T	G	V	S	R	Y	I	K	G	T	K	G	K	T	D	L	I	S	V	A	V	E	P	T	D	S	P	V	I	A	Q	A	L	A	G	E	E	I	K	P	G	P	H	K	I	Q	G	I	G	A	G	F	I	P	A
Query Conservation
Alig confidence																																								.	.																							.
Template Conservation																																								.	.																							.
Template Sequence		A	D	E	I	L	Q	Q	C	D	G	K	L	D	M	L	V	A	S	V	G	T	G	G	T	I	T	G	I	A	R	K	L	K	E	K	C	P	G	.	.	C	R	I	I	G	V	D	P	E	G	S	I	L	A	E	P	E	E	L	N	Q	T	.	E	Q	T	T	Y	E	V	E	G	I	G	Y	D	F	I	P	T
Template Known Secondary structure										T	T										S	S	S															T	T	.	.									T	T		S		S	S	S	G	G	G	G			.	S					S			S				S	S			T
Template Predicted Secondary structure																																								.	.																							.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.			.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.		.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	D	L	K	L	V	D	K	V	I	G	I	T	N	E	E	A	I	S	T	A	R	R	L	M	E	E	E	G	I	L	A	G	I	S	S	G	A	A	V	A	A	A	L	K	L	Q	E	D	E	S	F	T	N	K	N	I	V	V	I	L	P	S	S	G	E	R	Y	L	S	T	A	L	F	A	D	L	F	T
Query Conservation
Alig confidence																																																						.
Template Conservation																																																						.
Template Sequence		V	L	D	R	T	V	V	D	K	W	F	K	S	N	D	E	E	A	F	T	F	A	R	M	L	I	A	Q	E	G	L	L	C	G	G	S	A	G	S	T	V	A	V	A	V	K	A	A	Q	E	L	Q	.	E	G	Q	R	C	V	V	I	L	P	D	S	V	R	N	Y	M	T	K	F	L	S	D	R	W	M	L
Template Known Secondary structure		T			G	G	G																							T				B															G	G	G			.	T	T									B	B	G	G	G	G	T	T	T	T	T
Template Predicted Secondary structure																																																						.
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.		.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
		318	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	E	L	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	K	G	F	L
Template Known Secondary structure			T	T
Template Predicted Secondary structure
Template SS confidence
		393	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions