Job Description P0A7X3 Confidence 100.00% Date Thu Jan 5 11:06:23 GMT 2012 Rank 5 Aligned Residues 126 % Identity 33% Template c2zkqi_ PDB info PDB header:ribosomal protein/rna Chain: I: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Resolution 8.70 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.			.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																																						.	.
Query SS confidence																																																						.	.
Query Sequence		N	Q	Y	Y	G	T	G	R	R	K	S	S	A	A	R	V	F	I	K	P	G	N	G	K	I	V	I	N	Q	R	S	L	E	Q	Y	F	G	R	E	T	A	R	M	V	V	R	Q	P	L	E	L	V	.	.	D	M	V	E	K	L	D	L	Y	I	T	V	K	G	G	G	I	S	G	Q	A	G	A	I	R	H
Query Conservation																																																						.	.
Alig confidence																																										.												.	.
Template Conservation																																										.
Template Sequence		Q	S	V	Q	V	F	G	R	K	K	T	A	T	A	V	A	H	C	K	R	G	N	G	L	I	K	V	N	G	R	P	L	E	M	I	E	P	R	T	L	.	Q	Y	K	L	L	E	P	V	L	L	L	G	K	E	R	F	A	G	V	D	I	R	V	R	V	K	G	G	G	H	V	A	Q	I	Y	A	I	R	Q
Template Known Secondary structure									B		S	S										S	S	S					T	T							S	T	T	S		.		G	G	G	G						T	S	S		T	T	S	S									S	S
Template Predicted Secondary structure																																										.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.											.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.
Query Sequence		G	I	T	R	A	L	M	E	Y	D	E	S	L	.	.	.	.	.	.	.	.	.	.	R	S	E	L	R	K	A	G	F	V	T	R	D	A	R	Q	V	E	R	K	K	V	G	L	R	K	A	R	R	R	P	Q	F	S	K	R
Query Conservation															.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	I	S	K	A	L	V	A	Y	Y	Q	K	Y	V	D	E	A	S	K	K	E	I	K	D	I	L	I	Q	Y	D	R	T	L	L	A	D	P	R	R	C	E	S	K	K	F	G	G	P	G	A	R	A	R	Y	Q	K	S	Y	R
Template Known Secondary structure												T	T		T	T	S	S	S						S		S	S	S																	T	T	S	T	T	S	S						S
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions