 |
Job Description | P0AGM9 | Confidence | 4.03% | Date | Thu Jan 5 11:29:35 GMT 2012 |
Rank | 17 | Aligned Residues | 60 |
% Identity | 12% | Template | c2d4vD_ |
PDB info |
PDB header:oxidoreductase | Chain: D: PDB Molecule:isocitrate dehydrogenase; |
PDBTitle: crystal structure of nad dependent isocitrate dehydrogenase2 from acidithiobacillus thiooxidans
|
Resolution | 1.90 Å |
|
 |
  |   |
301 | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | G | P | L | Y | M | K | R | L | K | G | G | V | L | A | N | G | L | N | S | F | V | S | A | V | F | N | T | F | P | N | S | C | F | G | Q | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
N | N | G | V | I | Q | L | T | G | V | A | S | R | Y | V | G | F | V | V | A | L | M | L | I |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |
|
|
|
|   |
|   |
|
|   |
|
|
|
|
|
|   |
|   |   |
|   |
|   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . |   |
|   |   |   |   |   |
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |
|
|
|
|
|   |   |
|
|
|
|
|
|
|
|
|
|
|
|   |
|   |
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |
|
|
|
|   |
|   |
|
|
|   |
|
|
|
|
Template Sequence |   |
R | P | E | D | Y | S | V | V | A | T | L | N | L | N | G | D | Y | V | S | D | A | L | A | A | E | V | G | G | I | G | M | A | P | G | A | N | L | S | D | T | H | A | I | F | E | A | T | H | G | T | A | P | D | I | A | G | Q | G | K | A | N | P | S | S | L | I | L | S | A | V | M | M | L |
Template Known Secondary structure |   |
| G | G | G |
|
|  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| G | G | G |
|
|
|  |  |  |
| S | S |
|  |  |  |  |
| S |
|
|
|
| T | T | T | T | T | T | T |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
305 | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|