 |
Job Description | P76215 | Confidence | 17.99% | Date | Thu Jan 5 12:20:39 GMT 2012 |
Rank | 51 | Aligned Residues | 125 |
% Identity | 16% | Template | c1xovA_ |
PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:ply protein; |
PDBTitle: the crystal structure of the listeria monocytogenes bacteriophage psa2 endolysin plypsa
|
Resolution | 1.80 Å |
|
 |
  |   |
138 | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | |
. | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  | . |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | S | V | R | W | H | L | D | L | H | T | A | I | R | G | S | L | H | P | Q | F | G | V | L | P | Q | R | D | I | P | W | D | E | K | F | L | T | W | L | G | A | A | G | L | E | A | L | . |
V | F | H | Q | E | P | G | G | T | F | T | H | F | S | A | R | H | F | G | A | L | A | C | T | L | E | L | G | K | A | L | P |
Query Conservation |   |
  |   |   |
|   |   |
|
|
|
|
|
|   |   |   |
|   |   |   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|   |   |   |
| . |
|   |   |   |   |   |   |   |
|   |
|   |   |   |
|   |   |   |
|   |   |
|   |
|
|
|   |
|
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|
|
|
|
|
|
|   |
|
|   |   |   | . | . |   |
|   |
|   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |   |
|   |   |   |
|   |   |   |   |
|   |   |
|
|
|
|
|   |   |   |   |
|   |
|
|
|   |
|   |   |
|
|
|
|
|
|   |
|
|
|
|
|
Template Sequence |   |
N | P | A | D | V | H | I | S | V | H | L | N | A | G | K | G | . |
. |
T | G | V | E | V | W | Y | Y | A | G | D | E | K | G | R | K | L | A | V | E | I | S | A | K | M | A | K | A | L | G | L | P | N | R | G | A | K | A | T | K | D | L | R | F | L | N | S | T | K | G | T | A | V | L | L | E | V | C | F | V | D | R |
Template Known Secondary structure |   |
S |
|
| S |  |  |  |  |  |  |  |  |
| S | S |
| . | . |
| S |  |  |  |  |  |  | T | T |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  |  |  |  |  | S |
|
|  |  |  |  |  |
| S | S |
|  |  |  |  |  |  |  |  | T | T |
|
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
| . | . |
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | |
|
. | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . |
  |
  |   |
217 | . | . | 220 | . | . | . | . | |
|
|
|
. | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | G | Q | N | D | L | R | Q | . |
. |
. |
. |
F | A | V | T | A | S | A | I | A | A | L | L | S | G | E | S | V | G | I | V | R | T | P | P | L | R | Y | R | V | V | S | Q | I | T | R | H | S | P | S | F |
Query Conservation |   |
  |
|   |   |
|   |   |   | . | . | . | . |   |   |   |   |   |   |   |
|   |   |
|
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |   |
|   |   |   |   |   |   |   |
|
|
|   |
|
|
|   |
|
|   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
Template Sequence |   |
K | E | D | A | N | A | I | H | K | S | G | M | Y | D | K | L | G | I | A | I | A | E | G | L | T | G | K | T | V | A | A | K | N | P | N | R | H | S | G | A | V | V | D | S | V | P | M | L | S | K | M | D |
Template Known Secondary structure |   |
 |  |  |  |  |  |  | T | S | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S | S |
|
| S |
|
| G | G | G |  |  |  |  |  | B |
| S |  |  |  |  |  | S | S | S |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
148 | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|