|   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | Q | E | Q | T | M | L | N | V | A | D | N | S | G | A | R | R | V | M | C | I | K | V | L | G | G | S | H | R | R | Y | A | G | V | G | D | I | I | K | I | T | I | K | E | A | I | P | R | G | K | V | K | K | G | D | V | L | K | A | V | V | V | R | T | K | K | G | V | R | R | P | D | G | S | V | I | R | F | D | G |
Query Conservation |   |
|
|   |   |
|   |
|   |
|   |
|
|
|
|
|
|   |
|   |
|
|   |
|   |   |   |   |   |   |   |   |
|   |
|
|
|   |
|   |
|
|
|
|   |   |   |   |   |   |
|
|
|
|
|   |
|   |
|
|
|
|
|
|
|
|
|   |   |   |
|   |
|
|   |   |
|   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |
|   |
|   |
|   |
|
|
|
|
|
|   |
|   |
|
|   |
|   |   |   |   |   |   |   |   |
|   |
|
|
|   |
|   |
|
|
|
|   |   |   |   |   |   |
|
|
|
|
|   |
|   |
|
|
|
|
|
|
|
|
|   |   |   |
|   |
|
|   |   |
|   |
|   |   |
Template Sequence |   |
I | Q | E | Q | T | M | L | N | V | A | D | N | S | G | A | R | R | V | M | C | I | K | V | L | G | G | S | H | R | R | Y | A | G | V | G | D | I | I | K | I | T | I | K | E | A | I | P | R | G | K | V | K | K | G | D | V | L | K | A | V | V | V | R | T | K | K | G | V | R | R | P | D | G | S | V | I | R | F | D | G |
Template Known Secondary structure |   |
|
| T | T |
|  |  |  |  |
| S |
| S | S | B |
|  |  |  |  |  |  |  | T | T |
|
| S | S | S |
|
|
| T | T |
|  |  |  |  |
|
|
| S | B |
| S | S | S | S |
|
| T | T |
|
|  |  |  |  |  |  |  |
| S | S |
|  |  |
| T | T | S |
|  |  |
|
| S | S |
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . |
  |
  |   |
82 | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | A | C | V | L | L | N | N | N | S | E | Q | P | I | G | T | R | I | F | G | P | V | T | R | E | L | R | S | E | K | F | M | K | I | I | S | L | A | P | E | V |
Query Conservation |   |
|
|   |
|
|
|
|   |   |   |   |   |
|
|
|
|
|
|   |
|
|
|   |   |
|
|
|   |
|   |   |   |
|
|   |
|
|
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|
|
|
|   |   |   |   |   |
|
|
|
|
|
|   |
|
|
|   |   |
|
|
|   |
|
|   |   |
|
|   |
|
|
|   |   |
|
Template Sequence |   |
N | A | C | V | L | L | N | N | N | S | E | Q | P | I | G | T | R | I | F | G | P | V | T | R | E | L | R | S | E | K | F | M | K | I | I | S | L | A | P | E | V |
Template Known Secondary structure |   |
|  |  |  |  |  |
| S | S | S | S |
| B | S | S | S |
|
|
| S |
|
|
| S | T | T | S | S | S | S |
| S |  |  |  |  | T |
| S |
|
|
Template Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
82 | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . |
  |