|   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | |
. | 20 | . | . | . | . | . | . | . | . | . | 30 | |
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  | . |  |  |  |  |  |  |  |
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | Q | E | Q | T | M | L | N | V | A | D | N | S | G | A | R | R | . |
V | M | C | I | K | V | L | G | G | S | H | R | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
R | Y | A | G | V | G | D | I | I | K | I | T | I | K | E | A | I | P | R | G | K | V | K | K | G | D | V | L | K | A | V | V | V | R | T | K | K |
Query Conservation |   |
|
|   |   |
|   |
|   |
|   |
|
|
|
|
|
|   | . |
|   |
|
|   |
|   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |
|   |
|
|
|   |
|   |
|
|
|
|   |   |   |   |   |   |
|
|
|
|
|   |
|   |
|
|
|
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|
|   |   |   |   |   |
|
|   |
|
|
|   |
|   |
|   |   |
|
|   |
|   |   |   |   |   |   |
|
|   |
|   |   |   |   |   |   |   |   |   |
|   |
|   |   |
|   |   |   |   |
|
|
|   |   |
|   |
| . | . | . |
|
|   |
|
|
|
|
|
|   |   |   |   |
Template Sequence |   |
L | R | V | G | R | V | L | R | A | E | P | H | E | K | A | R | K | P | S | Y | K | L | W | V | D | L | G | P | L | G | V | K | Q | S | S | A | Q | I | T | E | L | Y | R | P | E | D | L | V | G | R | L | V | V | C | A | V | N | L | G | A | K | R | V | A | . |
. |
. |
G | F | L | S | E | V | L | V | L | G | V | P | D |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
| T | T |
| S | S |
|
|  |  |  |  |  |  |
| G | G | G |
|  |  |  |  |  |  |
|
| T | T | T |
|
|  |  |  |  | T | T |
|  |  |  |  |  |
| S | S |
|
|  |  |  | T | . | . | . | T |  |  |  |
| S |  |  |
|  |  |  |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|  |  |  |  |
| . | . | . |
|
|
|
|
|  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
12 | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | |
|
|
. | . | . | . | 80 | . | . | . | . | . | . | . | . |
  |
  |   |
68 | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | V | R | R | P | D | G | S | V | I | R | F | D | G | N | A | C | V | L | L | N | N | N | S | E | Q | P | I | G | T | R | I | F |
Query Conservation |   |
  |   |   |
|   |
|
|   |   |
|   |
|   |   |
|
|   |
|
|
|
|   |   |   |   |   |
|
|
|
|
|
|   |
Alig confidence |   |
. | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |
|
|   |
|   |   |   |   |   |   |
|   |   |
|   |
Template Sequence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
E | A | G | R | V | V | L | L | A | P | D | R | E | V | P | L | G | G | K | V | F |
Template Known Secondary structure |   |
. | . | . | . | . | . | . | . | . | . | . | . | T | T | S |
|  |  |  |
|
|
| S | S |
|
|
| T | T |
| B |
|
|
Template Predicted Secondary structure |   |
. | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
|
|
|
|
|
|
|
|
|
89 | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . |
  |