Job Description P76049 Confidence 99.96% Date Thu Jan 5 12:17:51 GMT 2012 Rank 17 Aligned Residues 285 % Identity 11% Template c2y6vB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:peroxisomal membrane protein lpx1; PDBTitle: peroxisomal alpha-beta-hydrolase lpx1 (yor084w) from2 saccharomyces cerevisiae (crystal form i) Resolution 2.83 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.								.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																										.	.																													.	.	.	.	.	.	.
Query SS confidence																										.	.																													.	.	.	.	.	.	.
Query Sequence		N	N	P	T	I	S	L	S	A	V	I	Y	F	P	P	K	F	D	E	T	R	Q	Y	Q	.	.	A	I	V	L	S	H	P	G	G	G	V	K	E	Q	T	A	G	T	Y	A	K	K	L	A	E	K	G	F	.	.	.	.	.	.	.	V	T	I	A	Y	D	A	S	Y	Q	G	E	S	G	G	E	P	R	Q
Query Conservation																										.	.																													.	.	.	.	.	.	.
Alig confidence																										.	.																				.									.	.	.	.	.	.	.
Template Conservation																																															.
Template Sequence		A	T	D	R	L	E	L	T	Y	D	V	Y	T	S	A	E	R	R	R	S	R	T	A	T	R	L	N	L	V	F	L	H	G	S	G	M	S	K	V	V	W	E	Y	Y	L	.	P	R	L	V	A	A	D	A	E	G	N	Y	A	I	D	K	V	L	L	I	D	Q	V	N	H	G	D	S	A	V	R	N	R	G
Template Known Secondary structure																S						T	T												T	T			G	G	G	G	G	G	G	G	.	G	G	S					T	T	T													T	T	S							T	T	T
Template Predicted Secondary structure																																															.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		83	.					.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.																																																.
Query SS confidence				.	.	.	.																																																.
Query Sequence		L	E	.	.	.	.	N	P	Y	I	R	T	E	D	I	S	A	V	I	D	Y	L	T	T	L	S	Y	V	D	N	T	R	I	G	A	M	G	I	C	A	G	A	G	Y	T	A	N	A	A	I	Q	D	R	.	R	I	K	A	I	G	T	V	S	A	V	N	I	G	S	I	F	R	N	G	W	E	N	N	V	K
Query Conservation				.	.	.	.																																																.
Alig confidence				.	.	.	.																		.																														.
Template Conservation																									.
Template Sequence		R	L	G	T	N	F	N	W	I	D	G	A	R	D	V	L	K	I	A	T	E	L	G	.	S	I	D	S	H	P	A	L	N	V	V	I	G	H	S	M	G	G	F	Q	A	L	A	C	D	V	L	Q	P	N	L	F	H	L	L	I	L	I	E	P	V	V	I	T	R	K	A	I	P	P	D	S	P	Q	I	P
Template Known Secondary structure		T	B		S																				.		G	G	G		S									T														T	T	S		S						S				S							T	T
Template Predicted Secondary structure																									.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	D	A	L	P	Y	V	E	A	G	S	N	A	R	T	S	D	I	S	S	G	E	Y	A	I	M	P	L	A	P	M	K	E	S	D	A	P	N	E	E	L	R	Q	A	W	E	Y	Y	H	T	P	R	A	Q	Y	P	T	A	P	G	Y	A	T	L	R	S	L	N	Q	I	I	T	Y	D	A	Y	H	M	A
Query Conservation
Alig confidence																																																														.	.	.
Template Conservation																																																														.	.	.
Template Sequence		E	N	L	Y	N	S	L	R	L	K	T	D	H	F	A	N	E	S	E	Y	V	K	Y	M	R	N	G	S	F	F	T	N	A	H	S	Q	I	L	Q	N	I	I	D	F	E	R	T	K	G	P	V	R	T	K	M	E	Q	A	Q	N	.	.	.	L	L	C	Y	M	N	M	Q	T	F	A	P	F	L	I	S	N
Template Known Secondary structure											T					S	S											T	S	S		T	T	S																					S	S						.	.	.			T	T	S		G	G	G	T						T	T
Template Predicted Secondary structure																																																														.	.	.
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.				.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	Y	L	T	Q	P	T	Q	I	V	A	G	S	Q	A	G	S	K	W	M	S	D	D	L	Y	D	R	A	S	S	Q	D	K	R	Y	H	I	V	E	G	A	N	H	M	D	L	Y	D	G	K	A	Y	V	A	E	A	I	S	V	L	A	P	F	F	E	E	T
Query Conservation
Alig confidence																						.																																						.	.	.
Template Conservation																						.																																						.	.	.
Template Sequence		V	K	F	V	R	K	R	T	I	H	I	V	G	A	R	S	N	W	P	P	.	Q	N	Q	L	F	L	Q	K	T	L	Q	N	Y	H	L	D	V	I	P	G	G	S	H	L	V	N	V	E	A	P	D	L	V	I	E	R	I	.	.	.	N	H	H	I	H	E	F
Template Known Secondary structure		G	G	G			S								T	T						.											S	S							T	T			T	T					S									.	.	.
Template Predicted Secondary structure																						.																																						.	.	.
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.				.	.	.	340	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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