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Job DescriptionP76049
Confidence99.92%DateThu Jan 5 12:17:51 GMT 2012
Rank77Aligned Residues247
% Identity12%Templatec2bklB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:prolyl endopeptidase; PDBTitle: structural and mechanistic analysis of two prolyl2 endopeptidases: role of inter-domain dynamics in3 catalysis and specificity
Resolution1.5 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  MMNNKVSFTNSNNPTISLSAVIYFPPKFDETRQYQAIVLSHPGGGVKEQT. AGTYAKKLAEKGFVTIAYDASYQGESGGE
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Template Sequence  YQVEQVFYASKDG. . TKVPMFVVHRKDLKRDGNAPTLLYGYGGFNVNMEANFRSSILPWLDAGGVYAVANLRGGGEYGKA
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Query Sequence  P. . . RQLENPYIRTEDISAVIDYLTTLSYVDNTRIGAMGICAGAGYTANAAIQDR. RIKAIGTVSAVNIGSIFRNGWENN
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Template Sequence  WHDAGRLDKKQNVFDDFHAAAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAMTQRPELYGAVVCAVPLLDMVRYHLFGSGR
Template Known Secondary structure  TTSGGGTTTS

GGGT
GGG
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TTTGGGSTTGG
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   493......500.........510.........520.........530.........540.........550.........560.........570..
 
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Query Sequence  VKSIDALPYVEAGSNARTSDISSGEYAIMPLAPMKESDAPNEELRQAWEYYHTPRAQYPTAPGYATLRSLNQIITYDAYH
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Template Sequence  TWIPEYGTAEKPED. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . FKTLHAYSPY
Template Known Secondary structure  GG

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   573......580...... ...590......
 
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Query Sequence  MAEVYLTQ. . PTQIVAGSQAGSKWMSDD. . . . LYDRASSQD. . . KRYHIVEGANHMDLYDGKAYVAEAISVLAPFFEETL
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Template Sequence  HHVRPDVRYPALLMMAADHDDRVDPMHARKFVAAVQNSPGNPATALLRIEANAGHGGADQVAKAIESS. VDLYSFLFQVL
Template Known Secondary structure  G


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   597..600.........610.........620.........630.........640.........650.........660.... .....670.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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