Job Description P37642 Confidence 21.54% Date Thu Jan 5 11:56:15 GMT 2012 Rank 5 Aligned Residues 211 % Identity 15% Template c3dh4A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus Resolution 2.70 Å

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		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.
Predicted Secondary structure																																																																									.
Query SS confidence																																																																									.
Query Sequence		D	R	L	G	N	Q	F	G	A	A	I	T	Y	F	S	F	L	S	M	I	P	I	L	M	V	S	F	A	A	G	G	F	V	L	A	S	H	P	M	L	L	Q	D	I	F	D	K	I	L	Q	N	I	S	D	P	T	L	A	A	T	L	K	N	T	I	N	T	A	V	Q	Q	.	R	T	T	V	G	L	V	G
Query Conservation																																																																									.
Alig confidence																																																																									.
Template Conservation
Template Sequence		K	S	V	S	E	A	Q	K	G	I	V	F	A	A	F	L	K	L	I	V	P	F	L	V	V	L	P	G	I	A	A	Y	V	I	T	S	D	P	Q	L	M	A	S	L	G	D	I	A	A	T	N	L	P	S	A	A	N	A	D	K	A	Y	P	W	L	T	Q	F	L	P	V	G	V	K	G	V	V	F	A	A
Template Known Secondary structure		S																			G	G	G	T	T																						T	T			S					S	S	S	G	G	G							T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160			.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.									.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure																					.	.																																					.	.	.	.	.	.	.	.
Query SS confidence																					.	.																																					.	.	.	.	.	.	.	.
Query Sequence		L	A	V	A	L	Y	S	G	I	N	W	M	G	N	L	R	E	A	I	.	.	R	A	Q	S	R	D	V	W	E	R	S	P	Q	D	Q	E	K	F	W	V	K	Y	L	R	D	F	I	S	L	I	G	L	L	I	A	L	.	.	.	.	.	.	.	.	I	V	T	L	S	I	T	S	V	A	G	S	A	Q	Q
Query Conservation																					.	.																																					.	.	.	.	.	.	.	.
Alig confidence																					.	.																																					.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	A	A	A	I	V	S	S	L	A	S	M	L	N	S	T	A	T	I	F	T	M	D	I	Y	K	E	Y	I	S	P	D	S	G	D	H	K	L	V	N	V	G	R	T	A	A	V	V	A	L	I	I	A	C	L	I	A	P	M	L	G	G	I	G	Q	A	F	Q	Y	I	Q	E	Y	T	G	L	V	S	P	G
Template Known Secondary structure																									T							S		S		S	S																					G	G	G	G	G	G		S											T	T	T
Template Predicted Secondary structure
Template SS confidence
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	I	S	A	L	H	L	N	S	I	E	W	L	K	P	T	W	R	L	I	G	L	A	I	S	I	F	A	N	Y	L	L	F	F	W	I	F	W	R	L	P	R	H	R	P	R	K	K	A	L	I	R	G	T	F	L	A	A	I	G	F	E	V	I	K	I
Query Conservation
Alig confidence																													.	.	.	.	.
Template Conservation																													.	.	.	.	.
Template Sequence		I	L	A	V	F	L	L	G	L	F	W	K	K	T	T	S	K	G	A	I	I	G	V	V	A	S	I	.	.	.	.	.	P	F	A	L	F	L	K	F	M	P	L	S	M	P	F	M	D	Q	M	L	Y	T	L	L	F	T	M	V	V	I	A	F	T	S	L
Template Known Secondary structure													T	T															.	.	.	.	.								T	S	S	S
Template Predicted Secondary structure																													.	.	.	.	.
Template SS confidence
		438	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.						.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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