Job Description P37642 Confidence 4.79% Date Thu Jan 5 11:56:15 GMT 2012 Rank 15 Aligned Residues 188 % Identity 12% Template c2w8aC_ PDB info PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate Resolution 3.35 Å

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		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	R	T	T	V	G	L	V	G	L	A	V	A	L	Y	S	G	I	N	W	M	G	N	L	R	E	A	I	R	A	Q	S	R	D	V	W	E	R	S	P	Q	D	Q	E	K	F	W	V	K	Y	L	R	D	F	I	S	L	I	G	L	L	I	A	L	I	V	T	L	S	I	T	S	V	A	G	S	A	Q	Q
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	S	D	W	T	I	V	G	I	V	S	V	L	T	L	A	F	I	F	S	A	I	S	G	V	G	K	G	I	Q	Y	L	S	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	N	X	V	L	A	A	L	L	A	I	F	V	F	V	V	G	P	T	V	S	I	L	N	L	L	P	G	S	I	G	N
Template Known Secondary structure																		T	T	G	G	G	T	T	S			S								.	.	.	.	.	.	.	.	.	.	.	.	.	.																	S
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.															.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.												.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.					270	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.
Query Sequence		M	I	I	S	A	L	H	L	N	S	I	E	W	L	K	.	.	.	.	.	.	.	.	.	.	.	P	T	W	R	L	I	G	L	A	I	S	I	F	A	N	Y	L	L	F	F	W	I	F	W	R	L	P	R	H	R	P	R	K	K	A	L	I	R	G	T	F	L	A	.	.	.	.	A	I	G	F	E	V	I
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.																				.	.					.	.																	.	.	.	.
Template Conservation																																															.	.					.	.
Template Sequence		Y	L	S	N	F	F	Q	X	A	G	R	T	A	X	S	A	D	G	T	A	G	E	W	L	G	S	W	T	I	F	Y	W	A	W	W	I	S	W	S	P	F	V	G	X	F	.	.	L	A	R	I	.	.	S	R	G	R	S	I	R	E	F	I	L	G	V	L	L	V	P	A	G	V	S	T	V	W	F	S	I
Template Known Secondary structure											T			T	T	T	T	S	S								T	T										T	T								.	.					.	.	T	T	T
Template Predicted Secondary structure																																															.	.					.	.
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.			.	.	.	.			.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
		277	.	.	280	.	.	.	.										.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.			.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.																		.	.
Query SS confidence										.	.	.	.	.	.	.	.	.																		.	.
Query Sequence		K	I	V	M	T	Y	T	L	.	.	.	.	.	.	.	.	.	P	S	L	M	K	S	P	S	G	A	A	F	G	S	V	L	G	.	.	L	M	A	F	F	Y	F	F	A	R	L	T	L	F	C	A	A	W	I	A	T	A	E	Y	K	D	D	P	R	M	P	G	K	T	Q	P
Query Conservation										.	.	.	.	.	.	.	.	.																		.	.
Alig confidence										.	.	.	.	.	.	.	.	.																		.	.
Template Conservation
Template Sequence		F	G	G	T	A	I	V	F	E	Q	N	G	E	S	I	W	G	D	G	A	A	E	E	Q	L	F	G	L	L	H	A	L	P	G	G	Q	I	X	G	I	I	A	X	I	L	L	G	T	F	F	I	T	S	A	D	S	A	S	T	V	X	G	T	X	S	Q	H	G	Q	L	E	A
Template Known Secondary structure													T						T	T		S										T	S	T	T																															T	T	T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions