Job Description P06993 Confidence 95.30% Date Thu Jan 5 10:59:50 GMT 2012 Rank 454 Aligned Residues 51 % Identity 25% Template c3iydF_ PDB info PDB header:transcription/dna Chain: F: PDB Molecule:rna polymerase sigma factor rpod; PDBTitle: three-dimensional em structure of an intact activator-dependent2 transcription initiation complex Resolution 19.80 Å

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		833	.	.	.	.	.	.	840	.	.	.	.	.	.	.						.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.
Predicted Secondary structure																	.	.	.	.	.
Query SS confidence																	.	.	.	.	.
Query Sequence		T	S	P	L	T	Q	R	E	W	Q	V	L	G	L	I	.	.	.	.	.	Y	S	G	Y	S	N	E	Q	I	A	G	E	L	E	V	A	A	T	T	I	K	T	H	I	R	N	L	Y	Q	K	L	G	V	A	H	R
Query Conservation																	.	.	.	.	.
Alig confidence																	.	.	.	.	.
Template Conservation
Template Sequence		L	A	G	L	T	A	R	E	A	K	V	L	R	M	R	F	G	I	D	M	N	T	D	H	T	L	E	E	V	G	K	Q	F	D	V	T	R	E	R	I	R	Q	I	E	A	K	A	L	R	K	L	R	H	P	S	R
Template Known Secondary structure		T	T	S	S													T	S	S	S					S	T	T	G	G	G	T	T	T	S	S		S	S											T	T	T	T	S		S	S
Template Predicted Secondary structure
Template SS confidence
		548	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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