Job Description P06993 Confidence 96.04% Date Thu Jan 5 10:59:50 GMT 2012 Rank 346 Aligned Residues 143 % Identity 15% Template c3a5dB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:v-type atp synthase alpha chain; PDBTitle: inter-subunit interaction and quaternary rearrangement2 defined by the central stalk of prokaryotic v1-atpase Resolution 4.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.			.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																																													.	.
Query SS confidence																																																													.	.
Query Sequence		L	S	R	P	V	R	L	D	H	T	V	V	R	E	R	L	L	A	K	L	S	G	A	N	N	F	R	L	A	L	I	T	S	P	A	G	Y	G	K	T	T	L	I	S	Q	W	A	A	G	K	N	D	I	G	W	Y	S	L	D	.	.	E	G	D	N	Q	Q	E	R	F	A	S	Y	L	I	A	A	V	Q	Q
Query Conservation																																																													.	.
Alig confidence																																																													.	.
Template Conservation
Template Sequence		Q	R	K	L	D	P	N	T	P	F	L	T	G	M	R	I	L	D	V	L	F	P	V	A	M	G	G	T	A	A	I	P	G	P	F	G	S	G	K	T	V	T	Q	Q	S	L	A	K	W	S	N	A	D	V	V	V	Y	V	G	C	G	E	R	G	N	E	M	T	D	V	L	V	E	F	P	E	L	T	D	P
Template Known Secondary structure		S					S		S	B				S								S			B	T	T								S	T	T	S	S												S	S		S								S			T	T	T	T					T	T	G	G	G				T
Template Predicted Secondary structure
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.							.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																			.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.
Query Sequence		A	T	N	G	H	C	A	I	C	E	T	M	A	Q	K	R	Q	Y	A	S	L	T	S	L	F	A	Q	L	F	I	E	L	A	.	.	.	.	.	.	E	W	H	S	P	L	Y	L	V	I	D	D	Y	H	L	I	T	N	P	V	I	H	E	S	M	R	F	F	I	R	H	Q	P	E
Query Conservation																																			.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.																	.	.
Template Conservation																																																									.	.
Template Sequence		K	T	G	G	P	L	M	H	R	T	V	L	I	A	N	T	S	N	M	P	V	A	A	R	E	A	S	I	Y	V	G	V	T	I	A	E	Y	F	R	D	Q	G	F	S	V	A	L	M	A	D	S	T	S	R	W	.	.	A	E	A	L	R	E	I	S	S	R	L	E	E	M	P	A
Template Known Secondary structure		T	T	T			G	G	G	G								T	T	S																						T	T								S						.	.											T	T
Template Predicted Secondary structure																																																									.	.
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330			.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions