Return to main results Retrieve Phyre Job Id

Job DescriptionP06993
Confidence96.46%DateThu Jan 5 10:59:50 GMT 2012
Rank279Aligned Residues36
% Identity22%Templatec2wjyA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:regulator of nonsense transcripts 1; PDBTitle: crystal structure of the complex between human nonsense2 mediated decay factors upf1 and upf2 orthorhombic form
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   20.........30.........40.........50.....
Predicted Secondary structure 









Query SS confidence 



































Query Sequence  ERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG
Query Conservation     
  
        
 
 
  




 
       
Alig confidence 



































Template Conservation   

  

  

   












 

  

  
Template Sequence  HSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYH
Template Known Secondary structure  TSS

TTS
Template Predicted Secondary structure 










Template SS confidence 



































   473......480.........490.........500........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions