Job Description P06993 Confidence 99.67% Date Thu Jan 5 10:59:50 GMT 2012 Rank 27 Aligned Residues 261 % Identity 10% Template c2qbyB_ PDB info PDB header:replication/dna Chain: B: PDB Molecule:cell division control protein 6 homolog 3; PDBTitle: crystal structure of a heterodimer of cdc6/orc1 initiators2 bound to origin dna (from s. solfataricus) Resolution 3.35 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.								30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.													.	.	.	.	60	.	.	.
Predicted Secondary structure									.																				.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.																				.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	S	K	L	S	R	P	.	V	R	L	D	H	T	V	V	R	E	R	L	L	A	K	L	S	G	A	.	.	.	.	.	.	.	N	N	F	R	L	A	L	I	T	S	P	A	G	Y	G	K	T	T	L	I	S	Q	W	A	A	G	.	.	.	.	.	.	.	.	.	.	.	.	K	N	D	I	G	W	Y	S
Query Conservation									.																				.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.																				.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	K	V	F	I	D	P	L	S	V	F	K	E	I	P	F	R	E	D	I	L	R	D	A	A	I	A	I	R	Y	F	V	K	N	E	V	K	F	S	N	L	F	L	G	L	T	G	T	G	K	T	F	V	S	K	Y	I	F	N	E	I	E	E	V	K	K	E	D	E	E	Y	K	D	V	K	Q	A	Y	V	N
Template Known Secondary structure		T	T	T	T	T							S	S		T	T																	T	T												T	T	S	S																			S	S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		L	D	E	G	D	N	Q	Q	E	R	F	A	S	Y	L	I	A	A	V	Q	Q	A	T	N	G	H	C	A	I	C	E	T	M	A	Q	K	R	Q	Y	A	S	L	T	S	L	F	A	Q	L	F	I	E	L	A	E	W	H	S	P	L	Y	L	V	I	D	D	Y	H	L	.	I	T	N	P	V	I	H	E	S	M
Query Conservation																																																																							.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.																				.	.															.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Sequence		C	R	E	V	G	G	T	P	Q	A	V	L	S	S	L	A	G	K	L	T	G	F	S	.	.	.	.	.	.	.	.	.	.	.	V	P	K	H	G	I	N	L	G	E	Y	I	D	K	I	K	N	G	T	.	.	R	N	I	R	A	I	I	Y	L	D	E	V	D	T	L	V	K	R	R	G	G	D	I	V	L
Template Known Secondary structure							S																S		.	.	.	.	.	.	.	.	.	.	.			S	S	S	S		T												.	.	S	S	S								T	T						S	T	T	S
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.																				.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.												.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140			.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.									.	.	.	.	210	.	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.
Query Sequence		R	F	F	I	R	H	Q	P	E	N	L	T	L	V	V	L	S	R	N	L	P	Q	L	G	I	A	N	L	R	V	R	D	Q	L	L	E	I	G	S	Q	Q	L	A	F	T	H	Q	E	A	K	Q	F	F	D	C	R	L	S	S	P	I	E	A	.	.	.	.	.	.	.	.	A	E	S	S	R	I	C	D	D
Query Conservation																																																																	.	.	.	.	.	.	.	.
Alig confidence																																										.	.																						.	.	.	.	.	.	.	.
Template Conservation																																										.	.
Template Sequence		Y	Q	L	L	R	S	D	A	N	I	S	V	I	M	I	S	N	D	I	N	V	R	D	Y	M	E	P	R	V	L	S	S	L	G	P	S	V	I	F	K	.	.	P	Y	D	A	E	Q	L	K	F	I	L	S	K	Y	A	E	Y	G	L	I	K	G	T	Y	D	D	E	I	L	S	Y	I	A	A	I	S	A	K
Template Known Secondary structure						T	S	S	S									S	S	T	T	T	T	T	T	S							T									.	.																		T	S		T	T	S			S												T
Template Predicted Secondary structure																																										.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.			.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	G	W	A	T	A	L	Q	L	I	A	L	S	A	R	Q	N	T	H	S	A	H	K	S	A	R	R	L	A	G	I	N	A	S	H	L	S	D	Y	L	V	D	E	V	L	D	N	V	D	L	A	T	R	H	F	L	L	K	S	A	I	L	R	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	H	G	D	A	R	K	A	V	N	L	L	F	R	A	A	Q	L	A	S	G	G	G	I	I	R	K	E	H	V	D	K	A	I	V	D	Y	E	Q	E	R	L	I	E	A	V	K	A	L	P	F	H	Y	K	L	A	L	R	S	L	I	E	S	E	D
Template Known Secondary structure		T																		T	T	S	S	S																									S	S													T			B
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions