Return to main results Retrieve Phyre Job Id

Job DescriptionP06993
Confidence99.77%DateThu Jan 5 10:59:50 GMT 2012
Rank15Aligned Residues69
% Identity26%Templatec2krfB_
PDB info PDB header:transcriptionChain: B: PDB Molecule:transcriptional regulatory protein coma; PDBTitle: nmr solution structure of the dna binding domain of competence protein2 a
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   828.830.........840.........850.........860.........870.........880.........890......
Predicted Secondary structure 






















Query SS confidence 




































































Query Sequence  PELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKM
Query Conservation          

 

 

  
 
 
 

 


  
 

  


 

  

 



 

 


  

 
  
Alig confidence 




































































Template Conservation 
       

  
  

   
 
 
 



  
 

  

      
  



     

  
   


Template Sequence  SSQKEQDVLTPRECLILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL
Template Known Secondary structure 

S
SSSSS
TTS
T

S

SSST

Template Predicted Secondary structure 
























Template SS confidence 




































































   146...150.........160.........170.........180.........190.........200.........210....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions