Job Description P06993 Confidence 95.67% Date Thu Jan 5 10:59:50 GMT 2012 Rank 414 Aligned Residues 131 % Identity 19% Template c2it1B_ PDB info PDB header:transport protein Chain: B: PDB Molecule:362aa long hypothetical maltose/maltodextrin PDBTitle: structure of ph0203 protein from pyrococcus horikoshii Resolution 1.94 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																									.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	F	R	L	A	L	I	T	S	P	A	G	Y	G	K	T	T	L	I	S	Q	W	A	.	A	G	K	N	D	I	G	W	Y	S	L	D	E	G	D	N	Q	Q	E	R	F	A	S	Y	L	I	A	A	V	Q	Q	A	T	N	G	H	C	A	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																									.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	G	E	F	M	A	L	L	G	P	S	G	S	G	K	S	T	L	L	Y	T	I	A	G	I	Y	K	P	T	S	G	K	I	Y	F	D	E	K	D	V	T	E	L	P	P	K	D	R	N	V	G	L	V	F	Q	N	W	A	L	Y	P	H	M	T	V	Y	K	N	I	A	F	P	L	E	L	R	K	A	P	R
Template Known Secondary structure		T	T									T	T	S	S										T	S	S			S							T	T				T	T	S						T						T	T					T	T	S													T	T
Template Predicted Secondary structure
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
																	93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.			150	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																										.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																										.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	E	T	M	A	Q	K	R	Q	Y	A	S	L	T	S	L	F	A	Q	L	F	I	E	L	A	E	W	H	S	P	L	Y	L	V	I	D	D	Y	H	L	I	T	N	P	V	I	H	E	S	M	R	F	F	I	R	H	Q	.	.	P	E	N	L	T	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																										.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																										.	.
Template Conservation
Template Sequence		E	E	I	D	K	K	V	R	E	V	A	K	M	L	H	I	D	K	L	L	N	R	Y	P	W	Q	L	S	G	G	Q	Q	Q	R	V	A	I	A	R	A	L	V	K	E	P	E	V	L	L	L	D	E	P	L	S	N	L	D	A	L	L	R	L	E	V	R	A	E	L	K	R	L	Q	K	E	L	G	I	T	T
Template Known Secondary structure															T	T		G	G	G	T	T	S		G	G	G	S															T	T			S						S	G	G	G	G	S																				T
Template Predicted Secondary structure
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		156	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	L	S	R	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	Y	V	T	H	D
Template Known Secondary structure						S
Template Predicted Secondary structure
Template SS confidence
		188	.	190	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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