Job Description P06993 Confidence 99.85% Date Thu Jan 5 10:59:50 GMT 2012 Rank 8 Aligned Residues 303 % Identity 13% Template c2a5yB_ PDB info PDB header:apoptosis Chain: B: PDB Molecule:ced-4; PDBTitle: structure of a ced-4/ced-9 complex Resolution 2.60 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.							30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.									.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Query Sequence		S	R	P	V	R	L	D	H	T	V	V	R	E	R	L	L	A	K	L	S	G	A	.	.	.	.	.	.	N	N	F	R	L	A	L	I	T	S	P	A	G	Y	G	K	T	T	L	I	S	Q	W	A	A	G	K	N	.	.	.	.	.	.	.	.	D	I	G	W	Y	S	L	D	E	G	D	N	Q	Q	E	R
Query Conservation																								.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Alig confidence												.												.	.	.	.	.	.																													.	.	.	.	.	.	.	.													.	.	.	.
Template Conservation												.																																																																		.	.	.	.
Template Sequence		N	V	P	K	Q	M	T	C	Y	I	.	R	E	Y	H	V	D	R	V	I	K	K	L	D	E	M	C	D	L	D	S	F	F	L	F	L	H	G	R	A	G	S	G	K	S	V	I	A	S	Q	A	L	S	K	S	D	Q	L	I	G	I	N	Y	D	S	I	V	W	L	K	D	S	G	T	A	P	.	.	.	.
Template Known Secondary structure		T							S			.																T	T	S	S	S								S	T	T	S	S													S	S	T	B	T	T	T	B	S											S	T	.	.	.	.
Template Predicted Secondary structure												.																																																																		.	.	.	.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	S	Y	L	I	A	A	V	Q	Q	A	T	N	G	H	C	A	I	C	E	T	M	A	Q	K	R	Q	Y	A	S	L	T	S	L	F	A	Q	L	F	I	E	L	A	E	W	H	S	P	L	Y	L	V	I	D	D	Y	H	L	I	T	N	P	V	I	H	E	S	M	R	F	F	I	R	H	Q	P	E	N	L
Query Conservation
Alig confidence		.	.																																																								.	.	.											.	.	.	.	.	.
Template Conservation		.	.																																																								.	.	.											.	.	.	.	.	.
Template Sequence		.	.	K	S	T	F	D	L	F	T	D	I	L	L	M	L	K	S	E	D	D	L	L	N	F	P	S	V	E	H	V	T	S	V	V	L	K	R	M	I	C	N	A	L	I	D	R	P	N	T	L	F	V	F	D	D	V	.	.	.	V	Q	E	E	T	I	R	W	A	Q	.	.	.	.	.	.	E	L	R	L
Template Known Secondary structure		.	.	T														T	T	T	S			T	T					T	T															T	T	S	T	T									.	.	.											.	.	.	.	.	.		T	T
Template Predicted Secondary structure		.	.																																																								.	.	.											.	.	.	.	.	.
Template SS confidence
				198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.				.	.	.	.	.	.	.	260	.	.							.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.			.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																																																					.	.
Query SS confidence																																																					.	.
Query Sequence		T	L	V	V	L	S	R	N	L	P	Q	L	G	I	A	N	L	R	V	R	D	Q	L	L	E	I	G	S	Q	Q	L	A	F	T	H	Q	E	A	K	Q	F	F	D	C	R	L	S	S	P	I	E	.	.	A	A	E	S	S	R	I	C	D	D	V	S	G	W	A	T	A	L	Q	L	I	A	L	S	A	R	Q
Query Conservation																																																					.	.
Alig confidence										.	.	.	.	.	.																																						.	.
Template Conservation										.	.	.	.	.	.
Template Sequence		R	C	L	V	T	T	R	D	.	.	.	.	.	.	V	E	I	S	N	A	A	S	Q	T	C	E	F	I	E	V	T	S	L	E	I	D	E	C	Y	D	F	L	E	A	Y	G	M	P	M	P	E	K	E	E	D	V	L	N	K	T	I	E	L	S	S	G	N	P	A	T	L	M	M	F	F	K	S	C	E	P
Template Known Secondary structure								S	B	.	.	.	.	.	.	G	G	G	G	G	G			S																						T	S																			T	T										T	T			S
Template Predicted Secondary structure										.	.	.	.	.	.
Template SS confidence
		267	.	.	270	.	.	.	.							.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
		232	.	.	.												.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.				280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.																																													.	.	.																		.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.																																													.	.	.																		.
Query Sequence		N	T	H	S	.	.	.	.	.	.	.	.	.	.	.	A	H	K	S	A	R	R	L	A	G	I	N	A	S	H	L	S	D	Y	L	V	D	E	V	L	D	N	V	D	L	A	T	R	H	F	L	L	K	S	A	I	L	R	S	.	.	.	M	N	D	A	L	I	T	R	V	T	G	E	E	N	G	Q	M	.
Query Conservation						.	.	.	.	.	.	.	.	.	.	.																																													.	.	.																		.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.																																													.	.	.																		.
Template Conservation
Template Sequence		K	T	F	E	K	M	A	Q	L	N	N	K	L	E	S	R	G	L	V	G	V	E	C	I	T	P	Y	S	Y	K	S	L	A	M	A	L	Q	R	C	V	E	V	L	S	D	E	D	R	S	A	L	A	F	A	V	V	M	P	P	G	V	D	I	P	V	K	L	W	S	C	V	I	P	V	E	Q	L	D	D	E
Template Known Secondary structure		S	S																S	S	T	T				S	S	S	S	S	S	S											T	S								T	T	G	G	G	S	S		T	T												S						T
Template Predicted Secondary structure
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.				.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																							.	.	.
Query SS confidence																							.	.	.
Query Sequence		R	L	E	E	I	E	R	Q	G	L	F	L	Q	R	M	D	D	T	G	E	W	.	.	.	F	C	Y	H	P	L	F	G	N	F	L	R	Q	R	C
Query Conservation																							.	.	.
Alig confidence																							.	.	.
Template Conservation
Template Sequence		V	A	D	R	L	K	R	L	S	K	R	G	A	L	L	S	G	K	R	M	P	V	L	T	F	K	I	D	H	I	I	H	M	F	L	K	H	V	V
Template Known Secondary structure									T	T	T	B	S	S		S					S	S	S															T	T	S
Template Predicted Secondary structure
Template SS confidence
		430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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