Job Description P06993 Confidence 99.90% Date Thu Jan 5 10:59:50 GMT 2012 Rank 2 Aligned Residues 306 % Identity 14% Template c1z6tC_ PDB info PDB header:apoptosis Chain: C: PDB Molecule:apoptotic protease activating factor 1; PDBTitle: structure of the apoptotic protease-activating factor 12 bound to adp Resolution 2.21 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30						.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.							.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.																							.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.																							.	.	.	.	.	.
Query Sequence		S	R	P	V	R	L	D	H	T	V	V	R	E	R	L	L	A	K	L	S	G	A	N	.	.	.	.	.	N	F	R	L	A	L	I	T	S	P	A	G	Y	G	K	T	T	L	I	S	Q	W	.	.	.	.	.	.	A	A	G	K	N	D	I	G	W	Y	S	L	D	E	G	D	N	Q	Q	E	R	F	A	S
Query Conservation																									.	.	.	.	.																							.	.	.	.	.	.
Alig confidence																									.	.	.	.	.																							.	.	.	.	.	.
Template Conservation
Template Sequence		G	V	P	Q	R	P	V	V	F	V	T	R	K	K	L	V	N	A	I	Q	Q	K	L	S	K	L	K	G	E	P	G	W	V	T	I	H	G	M	A	G	C	G	K	S	V	L	A	A	E	A	V	R	D	H	S	L	L	E	G	C	F	P	G	G	V	H	W	V	S	V	G	K	Q	D	K	S	G	L	L	M
Template Known Secondary structure		T						S	S																T	T	S	T	T	S										T	T	S	S																				T	T									S
Template Predicted Secondary structure
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	I	A	A	V	Q	Q	A	T	N	G	H	C	A	I	C	E	T	M	A	Q	K	R	Q	Y	A	S	L	T	S	L	F	A	Q	L	F	I	E	L	A	E	W	H	S	P	L	Y	L	V	I	D	D	Y	H	L	I	T	N	P	V	I	H	E	S	M	R	F	F	I	R	H	Q	P	E	N	L	T	L	V
Query Conservation
Alig confidence												.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.
Template Sequence		K	L	Q	N	L	C	T	R	L	D	.	.	.	.	.	.	Q	D	E	S	F	S	Q	R	L	P	L	N	I	E	E	A	K	D	R	L	R	I	L	M	L	R	K	H	P	R	S	L	L	I	L	D	D	V	W	D	S	.	.	.	.	.	.	.	.	.	.	W	V	L	K	A	F	D	S	Q	C	Q	I	L
Template Known Secondary structure											T	.	.	.	.	.	.	T	T			S		S	S				S															T		T	T												.	.	.	.	.	.	.	.	.	.					T	T		S	S
Template Predicted Secondary structure												.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.
Template SS confidence
		198	.	200	.	.	.	.	.	.	.							.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.											.	250	.	.	.	.	.	.	.	.	.	260	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.			.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																																																			.	.
Query SS confidence																																																			.	.
Query Sequence		V	L	S	R	N	L	P	Q	L	G	I	A	N	L	R	V	R	D	Q	L	L	E	I	G	S	Q	Q	L	A	F	T	H	Q	E	A	K	Q	F	F	D	C	R	L	S	S	P	I	E	A	.	.	A	E	S	S	R	I	C	D	D	V	S	G	W	A	T	A	L	Q	L	I	A	L	S	A	R	Q	N	T	H
Query Conservation																																																			.	.
Alig confidence								.	.	.	.	.																																							.	.
Template Conservation								.	.	.	.	.
Template Sequence		L	T	T	R	D	K	.	.	.	.	.	S	V	T	D	S	V	M	G	P	K	Y	V	V	P	V	E	S	S	L	G	K	E	K	G	L	E	I	L	S	L	F	V	N	M	K	K	A	D	L	P	E	Q	A	H	S	I	I	K	E	C	K	G	S	P	L	V	V	S	L	I	G	A	L	L	R	D	F	P	N
Template Known Secondary structure					S		G	.	.	.	.	.	G	G	G	T	T			S									S	S															T	S		G	G	G	S		T										T	T															S	T	T
Template Predicted Secondary structure								.	.	.	.	.
Template SS confidence
		262	.	.	.	.	.						.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		235	.	.	.	.	240	.	.											.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.						280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.
Query Sequence		S	A	H	K	S	A	R	R	.	.	.	.	.	.	.	.	.	.	L	A	G	I	N	A	S	H	L	S	D	Y	L	V	D	E	V	L	D	N	V	D	L	A	T	R	H	F	L	L	K	S	A	I	L	R	S	.	.	.	.	.	M	N	D	A	L	I	T	R	V	T	G	E	E	N	G	Q	M	R	L	E
Query Conservation										.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.
Template Conservation
Template Sequence		R	W	E	Y	Y	L	K	Q	L	Q	N	K	Q	F	K	R	I	R	K	S	S	S	Y	D	Y	E	A	L	D	E	A	M	S	I	S	V	E	M	L	R	E	D	I	K	D	Y	Y	T	D	L	S	I	L	Q	K	D	V	K	V	P	T	K	V	L	C	I	L	W	D	M	E	T	E	E	V	E	D	I	L	Q
Template Known Secondary structure												S						S	S			S	S																T	S											G	G	G			T	T													T
Template Predicted Secondary structure
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	E	R	Q	G	L	F	L	Q	R	M	D	D	T	G	E	W	F	C	Y	H	P	L	F	G	N	F	L	R	Q	R	C	Q	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	F	V	N	K	S	L	L	F	C	D	R	N	G	K	S	F	R	Y	Y	L	H	D	L	Q	V	D	F	L	T	E	K	N	C	S
Template Known Secondary structure						T	T	S	S						T	T																		T	G	G
Template Predicted Secondary structure
Template SS confidence
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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