Job Description P06993 Confidence 98.13% Date Thu Jan 5 10:59:50 GMT 2012 Rank 104 Aligned Residues 199 % Identity 13% Template c1ny5A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state Resolution 2.40 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.						.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.			.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																				.	.	.	.	.																								.	.
Query SS confidence																				.	.	.	.	.																								.	.
Query Sequence		V	R	L	D	H	T	V	V	R	E	R	L	L	A	K	L	S	G	.	.	.	.	.	A	N	N	F	R	L	A	L	I	T	S	P	A	G	Y	G	K	T	T	L	I	S	Q	.	.	W	A	A	G	K	N	D	I	G	W	Y	S	L	D	E	G	D	N	Q	Q	E	R	F	A	S	Y	L	I	A	A	V	Q
Query Conservation																				.	.	.	.	.																								.	.
Alig confidence																				.	.	.	.	.																								.	.
Template Conservation
Template Sequence		L	K	E	E	E	Y	V	F	E	S	P	K	M	K	E	I	L	E	K	I	K	K	I	S	C	A	E	C	P	V	L	I	T	G	E	S	G	V	G	K	E	V	V	A	R	L	I	H	K	L	S	D	R	S	K	E	P	F	V	A	L	N	V	A	S	I	P	R	D	I	F	E	A	E	L	F	G	Y	E	K
Template Known Secondary structure		T	T								S														T	T			S							S	T	T	S	S												S	T	T	T	T	S							T	T	T	S												B		T
Template Predicted Secondary structure
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.											.	.	.	.	150	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	A	T	N	G	H	C	A	I	C	E	T	M	A	Q	K	R	Q	Y	A	S	L	T	S	L	F	A	Q	L	F	I	E	L	A	E	W	H	S	P	L	Y	L	V	I	D	D	Y	H	L	I	T	N	P	V	I	H	E	S	M	R	F	F	.	.	.	.	.	.	.	.	.	.	I	R	H	Q	P	E	N	L
Query Conservation																																																																.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	A	F	T	G	A	V	S	S	K	E	G	F	F	E	L	A	D	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	F	L	D	E	I	G	E	L	S	L	E	A	Q	A	K	L	L	R	V	I	E	S	G	K	F	Y	R	L	G	G	R	K	E	I	E	V	N	V
Template Known Secondary structure		T	S	S	T	T			S		B							T	T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S	G	G	G																S					B	T			S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.																					.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.					.	.	.	180	.	.	.	.	.	.	.	.			.	190	.	.	.	.	.	.	.	.	.	200	.											.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.													.	.														.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.													.	.														.	.	.	.	.	.	.	.	.	.
Query Sequence		T	L	V	V	L	S	R	N	L	P	Q	L	G	I	A	N	L	R	V	R	D	Q	L	.	.	.	.	L	E	I	G	S	Q	Q	L	A	F	T	H	.	.	Q	E	A	K	Q	F	F	D	C	R	L	S	S	.	.	.	.	.	.	.	.	.	.	P	I	E	A	A	E	S	S	R	I	C	D	D	V	S	G
Query Conservation																									.	.	.	.													.	.														.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.													.	.														.	.	.	.	.	.	.	.	.	.														.	.
Template Conservation																																																																															.	.
Template Sequence		R	I	L	A	A	T	N	R	N	I	K	E	L	V	K	E	G	K	F	R	E	D	L	Y	Y	R	L	G	V	I	E	I	E	I	P	P	L	R	E	R	K	E	D	I	I	P	L	A	N	H	F	L	K	K	F	S	R	K	Y	A	K	E	V	E	G	F	T	K	S	A	Q	E	L	L	L	S	Y	.	.	P
Template Known Secondary structure								S	S								T	T	S	S									T	T								G	G	G																				T	T																	S	.	.
Template Predicted Secondary structure																																																																															.	.
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350			.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	A	T	A	L	Q	L	I	A	L	S	A	R	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	Y	G	N	V	R	E	L	K	N	V	I	E	R
Template Known Secondary structure			T	T
Template Predicted Secondary structure
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions