Secondary structure and disorder prediction

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Sequence		M	K	K	I	I	E	T	Q	R	A	P	G	A	I	G	P	Y	V	Q	G	V	D	L	G	S	M	V	F	T	S	G	Q	I	P	V	C	P	Q	T	G	E	I	P	A	D	V	Q	D	Q	A	R	L	S	L	E	N	V	K	A	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?																												?	?				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	V	A	A	G	L	S	V	G	D	I	I	K	M	T	V	F	I	T	D	L	N	D	F	A	T	I	N	E	V	Y	K	Q	F	F	D	E	H	Q	A	T	Y	P	T	R	S	C	V	Q	V	A	R	L	P	K	D	V	K	L	E
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.
Sequence		I	E	A	I	A	V	R	S	A
Secondary structure
SS confidence
Disorder								?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1j7h chain A Region: 1 - 127 Aligned: 127 Modelled: 127 Confidence: 100.0% Identity: 67% Fold: Bacillus chorismate mutase-like Superfamily: YjgF-like Family: YjgF/L-PSP Phyre2 PDB 1qah chain A Region: 1 - 129 Aligned: 126 Modelled: 129 Confidence: 100.0% Identity: 44% Fold: Bacillus chorismate mutase-like Superfamily: YjgF-like Family: YjgF/L-PSP Phyre2 PDB 1nq3 chain A Region: 1 - 129 Aligned: 126 Modelled: 129 Confidence: 100.0% Identity: 44% Fold: Bacillus chorismate mutase-like Superfamily: YjgF-like Family: YjgF/L-PSP Phyre2 PDB 1oni chain A Region: 1 - 128 Aligned: 125 Modelled: 128 Confidence: 100.0% Identity: 42% Fold: Bacillus chorismate mutase-like Superfamily: YjgF-like Family: YjgF/L-PSP Phyre2 PDB 2b33 chain A domain 1 Region: 2 - 128 Aligned: 124 Modelled: 127 Confidence: 100.0% Identity: 49% Fold: Bacillus chorismate mutase-like Superfamily: YjgF-like Family: YjgF/L-PSP Phyre2 PDB 3k0t chain A Region: 2 - 126 Aligned: 122 Modelled: 125 Confidence: 100.0% Identity: 42% PDB header:sugar binding protein Chain: A: PDB Molecule:endoribonuclease l-psp, putative; PDBTitle: crystal structure of pspto -psp protein in complex with d-beta-glucose2 from pseudomonas syringae pv. tomato str. dc3000 Phyre2 PDB 1qu9 chain A Region: 2 - 128 Aligned: 126 Modelled: 127 Confidence: 100.0% Identity: 73% Fold: Bacillus chorismate mutase-like Superfamily: YjgF-like Family: YjgF/L-PSP Phyre2 PDB 2cvl chain A domain 1 Region: 2 - 127 Aligned: 123 Modelled: 125 Confidence: 100.0% Identity: 40% Fold: Bacillus chorismate mutase-like Superfamily: YjgF-like Family: YjgF/L-PSP Phyre2 PDB 3quw chain A Region: 3 - 127 Aligned: 122 Modelled: 125 Confidence: 100.0% Identity: 38% PDB header:protein binding Chain: A: PDB Molecule:protein mmf1; PDBTitle: crystal structure of yeast mmf1 Phyre2 PDB 3r0p chain B Region: 2 - 126 Aligned: 122 Modelled: 125 Confidence: 100.0% Identity: 41% PDB header:hydrolase Chain: B: PDB Molecule:l-psp putative endoribonuclease; PDBTitle: crystal structure of l-psp putative endoribonuclease from uncultured2 organism Phyre2 PDB 3lme chain E Region: 1 - 129 Aligned: 127 Modelled: 129 Confidence: 100.0% Identity: 28% PDB header:translation Chain: E: PDB Molecule:possible translation initiation inhibitor; PDBTitle: structure of probable translation initiation inhibitor from2 (rpa2473) from rhodopseudomonas palustris Phyre2 PDB 1jd1 chain A Region: 3 - 128 Aligned: 123 Modelled: 126 Confidence: 100.0% Identity: 35% Fold: Bacillus chorismate mutase-like Superfamily: YjgF-like Family: YjgF/L-PSP Phyre2 PDB 1xrg chain B Region: 3 - 127 Aligned: 122 Modelled: 125 Confidence: 100.0% Identity: 49% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative translation initiation inhibitor, yjgf PDBTitle: conserved hypothetical protein from clostridium2 thermocellum cth-2968 Phyre2 PDB 1qd9 chain A Region: 2 - 127 Aligned: 123 Modelled: 126 Confidence: 100.0% Identity: 46% Fold: Bacillus chorismate mutase-like Superfamily: YjgF-like Family: YjgF/L-PSP Phyre2 PDB 2dyy chain G Region: 2 - 127 Aligned: 123 Modelled: 126 Confidence: 100.0% Identity: 52% PDB header:structural genomics, unknown function Chain: G: PDB Molecule:upf0076 protein ph0854; PDBTitle: crystal structure of putative translation initiation2 inhibitor ph0854 from pyrococcus horikoshii Phyre2 PDB 1x25 chain A domain 1 Region: 3 - 127 Aligned: 122 Modelled: 125 Confidence: 100.0% Identity: 41% Fold: Bacillus chorismate mutase-like Superfamily: YjgF-like Family: YjgF/L-PSP Phyre2 PDB 1xrg chain A Region: 3 - 127 Aligned: 122 Modelled: 125 Confidence: 100.0% Identity: 49% Fold: Bacillus chorismate mutase-like Superfamily: YjgF-like Family: YjgF/L-PSP Phyre2 PDB 3l7q chain D Region: 3 - 126 Aligned: 121 Modelled: 124 Confidence: 100.0% Identity: 49% PDB header:translation Chain: D: PDB Molecule:putative translation initiation inhibitor, aldr regulator- PDBTitle: crystal structure of aldr from streptococcus mutans Phyre2 PDB 3m4s chain C Region: 3 - 126 Aligned: 121 Modelled: 124 Confidence: 100.0% Identity: 32% PDB header:unknown function Chain: C: PDB Molecule:putative endoribonuclease l-psp; PDBTitle: crystal structure of a putative endoribonuclease l-psp from entamoeba2 histolytica, orthorhombic form Phyre2 PDB 3v4d chain C Region: 10 - 128 Aligned: 116 Modelled: 119 Confidence: 100.0% Identity: 30% PDB header:oxidoreductase Chain: C: PDB Molecule:aminoacrylate peracid reductase rutc; PDBTitle: crystal structure of rutc protein a member of the yjgf family from2 e.coli Phyre2 1 d1j7ha_ 2 d1qaha_ 3 d1nq3a_ 4 d1onia_ 5 d2b33a1 6 c3k0tA_ 7 d1qu9a_ 8 d2cvla1 9 c3quwA_ 10 c3r0pB_ 11 c3lmeE_ 12 d1jd1a_ 13 c1xrgB_ 14 d1qd9a_ 15 c2dyyG_ 16 d1x25a1 17 d1xrga_ 18 c3l7qD_ 19 c3m4sC_ 20 c3v4dC_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1j7ha_ 100.0 67 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:YjgF/L-PSP 2 d1qaha_ 100.0 44 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:YjgF/L-PSP 3 d1nq3a_ 100.0 44 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:YjgF/L-PSP 4 d1onia_ 100.0 42 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:YjgF/L-PSP 5 d2b33a1 100.0 49 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:YjgF/L-PSP 6 c3k0tA_ 100.0 42 PDB header:sugar binding protein Chain: A: PDB Molecule:endoribonuclease l-psp, putative; PDBTitle: crystal structure of pspto -psp protein in complex with d-beta-glucose2 from pseudomonas syringae pv. tomato str. dc3000 7 d1qu9a_ 100.0 73 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:YjgF/L-PSP 8 d2cvla1 100.0 40 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:YjgF/L-PSP 9 c3quwA_ 100.0 38 PDB header:protein binding Chain: A: PDB Molecule:protein mmf1; PDBTitle: crystal structure of yeast mmf1 10 c3r0pB_ 100.0 41 PDB header:hydrolase Chain: B: PDB Molecule:l-psp putative endoribonuclease; PDBTitle: crystal structure of l-psp putative endoribonuclease from uncultured2 organism 11 c3lmeE_ 100.0 28 PDB header:translation Chain: E: PDB Molecule:possible translation initiation inhibitor; PDBTitle: structure of probable translation initiation inhibitor from2 (rpa2473) from rhodopseudomonas palustris 12 d1jd1a_ 100.0 35 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:YjgF/L-PSP 13 c1xrgB_ 100.0 49 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative translation initiation inhibitor, yjgf PDBTitle: conserved hypothetical protein from clostridium2 thermocellum cth-2968 14 d1qd9a_ 100.0 46 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:YjgF/L-PSP 15 c2dyyG_ 100.0 52 PDB header:structural genomics, unknown function Chain: G: PDB Molecule:upf0076 protein ph0854; PDBTitle: crystal structure of putative translation initiation2 inhibitor ph0854 from pyrococcus horikoshii 16 d1x25a1 100.0 41 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:YjgF/L-PSP 17 d1xrga_ 100.0 49 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:YjgF/L-PSP 18 c3l7qD_ 100.0 49 PDB header:translation Chain: D: PDB Molecule:putative translation initiation inhibitor, aldr regulator- PDBTitle: crystal structure of aldr from streptococcus mutans 19 c3m4sC_ 100.0 32 PDB header:unknown function Chain: C: PDB Molecule:putative endoribonuclease l-psp; PDBTitle: crystal structure of a putative endoribonuclease l-psp from entamoeba2 histolytica, orthorhombic form 20 c3v4dC_ 100.0 30 PDB header:oxidoreductase Chain: C: PDB Molecule:aminoacrylate peracid reductase rutc; PDBTitle: crystal structure of rutc protein a member of the yjgf family from2 e.coli 21 d2cwja1 not modelled 100.0 46 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:YjgF/L-PSP 22 d1pf5a_ not modelled 100.0 30 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:YjgF/L-PSP 23 d2otma1 not modelled 100.0 21 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:YjgF/L-PSP 24 c2ig8C_ not modelled 100.0 29 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein pa3499; PDBTitle: crystal structure of a protein of unknown function pa3499 from2 pseudomonas aeruginosa 25 c3i7tA_ not modelled 100.0 25 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of rv2704, a member of highly conserved2 yjgf/yer057c/uk114 family, from mycobacterium tuberculosis 26 d2ewca1 not modelled 100.0 16 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:YjgF/L-PSP 27 c3kjjL_ not modelled 100.0 21 PDB header:unknown function Chain: L: PDB Molecule:nmb1025 protein; PDBTitle: crystal structure of nmb1025, a member of yjgf protein family, from2 neisseria meningitidis (hexagonal crystal form) 28 c3k12F_ not modelled 100.0 27 PDB header:structural genomics, unknown function Chain: F: PDB Molecule:uncharacterized protein a6v7t0; PDBTitle: crystal structure of an uncharacterized protein a6v7t0 from2 pseudomonas aeruginosa 29 c3gtzA_ not modelled 100.0 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative translation initiation inhibitor; PDBTitle: crystal structure of a putative translation initiation inhibitor from2 salmonella typhimurium 30 c3d01G_ not modelled 100.0 24 PDB header:structural genomics, unknown function Chain: G: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the protein atu1372 with unknown function from2 agrobacterium tumefaciens 31 c3i3fB_ not modelled 100.0 22 PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein; PDBTitle: hypothetical protein from giardia lamblia gl50803_14299 32 c3lybC_ not modelled 100.0 32 PDB header:hydrolase Chain: C: PDB Molecule:putative endoribonuclease; PDBTitle: structure of putative endoribonuclease(kp1_3112) from2 klebsiella pneumoniae 33 d1w5da1 not modelled 20.7 22 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:Dac-like 34 d1aisa1 not modelled 17.1 15 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 35 c3fqmA_ not modelled 15.5 29 PDB header:metal binding protein Chain: A: PDB Molecule:non-structural protein 5a; PDBTitle: crystal structure of a novel dimeric form of hcv ns5a domain i protein 36 d1w79a1 not modelled 14.7 14 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:Dac-like 37 d2ex2a1 not modelled 14.1 14 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:Dac-like 38 d1qnaa1 not modelled 13.1 19 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 39 c2wknE_ not modelled 12.8 17 PDB header:hydrolase Chain: E: PDB Molecule:formamidase; PDBTitle: gamma lactamase from delftia acidovorans 40 c3a3eB_ not modelled 12.1 7 PDB header:hydrolase Chain: B: PDB Molecule:penicillin-binding protein 4; PDBTitle: crystal structure of penicillin binding protein 4 (dacb)2 from haemophilus influenzae, complexed with novel beta-3 lactam (cmv) 41 d1cdwa1 not modelled 11.9 19 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 42 d1nh2a1 not modelled 11.3 22 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 43 d1crka1 not modelled 9.7 14 Fold:Guanido kinase N-terminal domain Superfamily:Guanido kinase N-terminal domain Family:Guanido kinase N-terminal domain 44 d1mp9a1 not modelled 8.6 18 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 45 d1qh4a1 not modelled 8.4 11 Fold:Guanido kinase N-terminal domain Superfamily:Guanido kinase N-terminal domain Family:Guanido kinase N-terminal domain 46 c3oqhB_ not modelled 8.0 21 PDB header:ligase Chain: B: PDB Molecule:putative uncharacterized protein yvmc; PDBTitle: crystal structure of b. licheniformis cdps yvmc-blic 47 d1g0wa1 not modelled 7.7 15 Fold:Guanido kinase N-terminal domain Superfamily:Guanido kinase N-terminal domain Family:Guanido kinase N-terminal domain 48 d1twfc2 not modelled 7.7 24 Fold:Insert subdomain of RNA polymerase alpha subunit Superfamily:Insert subdomain of RNA polymerase alpha subunit Family:Insert subdomain of RNA polymerase alpha subunit 49 d1vrpa1 not modelled 7.1 13 Fold:Guanido kinase N-terminal domain Superfamily:Guanido kinase N-terminal domain Family:Guanido kinase N-terminal domain 50 d1i0ea1 not modelled 6.7 13 Fold:Guanido kinase N-terminal domain Superfamily:Guanido kinase N-terminal domain Family:Guanido kinase N-terminal domain 51 d1r2za1 not modelled 6.1 16 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 52 d1u6ra1 not modelled 5.9 7 Fold:Guanido kinase N-terminal domain Superfamily:Guanido kinase N-terminal domain Family:Guanido kinase N-terminal domain 53 c2x47A_ not modelled 5.8 11 PDB header:signaling protein Chain: A: PDB Molecule:macro domain-containing protein 1; PDBTitle: crystal structure of human macrod1 54 c2jvfA_ not modelled 5.4 11 PDB header:de novo protein Chain: A: PDB Molecule:de novo protein m7; PDBTitle: solution structure of m7, a computationally-designed2 artificial protein 55 c1qysA_ not modelled 5.3 8 PDB header:de novo protein Chain: A: PDB Molecule:top7; PDBTitle: crystal structure of top7: a computationally designed2 protein with a novel fold 56 c3a1yF_ not modelled 5.1 41 PDB header:ribosomal protein Chain: F: PDB Molecule:50s ribosomal protein p1 (l12p); PDBTitle: the structure of protein complex

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0