Job Description P77216 Confidence 98.07% Date Thu Jan 5 12:26:29 GMT 2012 Rank 40 Aligned Residues 189 % Identity 13% Template c3q4gA_ PDB info PDB header:ligase Chain: A: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: structure of nad synthetase from vibrio cholerae Resolution 2.40 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.								.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																												.	.																											.	.	.	.	.	.	.
Query SS confidence																												.	.																											.	.	.	.	.	.	.
Query Sequence		S	I	Y	K	I	P	L	P	L	N	I	L	E	A	A	R	E	R	I	T	W	T	L	N	T	L	.	.	P	R	V	C	V	S	F	S	G	G	K	D	S	G	L	M	L	H	L	T	A	E	L	A	R	Q	.	.	.	.	.	.	.	M	G	K	K	I	C	V	L	F	I	D	W	E	A	Q	F	S	C	T
Query Conservation																												.	.																											.	.	.	.	.	.	.
Alig confidence																												.	.																											.	.	.	.	.	.	.													.
Template Conservation																																																																											.
Template Sequence		R	V	L	P	S	I	D	P	Q	F	E	I	E	R	R	V	A	F	I	K	R	K	L	T	E	A	R	Y	K	S	L	V	L	G	I	S	G	G	V	D	S	T	T	C	G	R	L	A	Q	L	A	V	E	E	L	N	Q	Q	H	N	T	T	E	Y	Q	F	I	A	V	R	L	P	Y	.	G	E	Q	K	D	E
Template Known Secondary structure		T			S	S																						T										S	S																					T	T		S											S	.	S	S		S
Template Predicted Secondary structure																																																																											.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	N	Y	V	Q	S	L	R	E	L	Y	T	D	V	I	E	E	F	Y	W	V	A	L	P	L	T	T	Q	N	S	L	S	Q	Y	Q	P	E	W	Q	C	W	E	P	D	V	E	W	V	R	Q	P	P	Q	D	A	I	T	D	P	D	F	F	C	F	Y	Q	P	G	M	T	F	E	Q	F	V	R	E	F	A	E
Query Conservation
Alig confidence														.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	E	A	Q	L	A	L	S	F	I	R	P	.	.	.	T	H	S	V	S	V	N	I	K	A	G	V	D	G	L	H	A	A	S	H	H	A	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	N	T	G	L	I	P	S	D	P	A	K	V	D	F	I	K	G	N	V	K	A	R	A	R	X	V	A	Q
Template Known Secondary structure														.	.	.	S																								.	.	.	.	.	.	.	.	.	.	.	.	.			T		S		S	S
Template Predicted Secondary structure														.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100				.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.														.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		W	F	S	Q	K	R	P	A	A	M	M	I	G	I	R	.	A	D	E	S	Y	N	R	F	V	A	I	A	S	L	N	K	Q	R	F	A	D	D	K	P	W	T	T	A	A	P	G	G	H	S	W	Y	I	Y	P	I	Y	D	W	K	V	A	D	I	W	T	W	Y	A	N	H	Q	S	L
Query Conservation																	.
Alig confidence																	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	E	I	A	G	Y	V	G	G	L	V	L	G	T	D	H	S	A	E	N	I	T	G	F	Y	T	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	G	D	G	A	C	D	L	A	P	L	F	G	L	N	K	R	Q	V	R	L	L	A	K	T	L	G	A	P
Template Known Secondary structure									T				B											T		S		T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	T			S	B		T	T	T	T													T	T
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.																			180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions