Job Description P77216 Confidence 98.36% Date Thu Jan 5 12:26:29 GMT 2012 Rank 36 Aligned Residues 176 % Identity 14% Template c2hmaA_ PDB info PDB header:transferase Chain: A: PDB Molecule:probable trna (5-methylaminomethyl-2-thiouridylate)- PDBTitle: the crystal structure of trna (5-methylaminomethyl-2-thiouridylate)-2 methyltransferase trmu from streptococcus pneumoniae Resolution 2.41 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.					.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																																													.	.	.	.
Query SS confidence																																													.	.	.	.
Query Sequence		N	T	L	P	R	V	C	V	S	F	S	G	G	K	D	S	G	L	M	L	H	L	T	A	E	L	A	R	Q	M	G	K	K	I	C	V	L	F	I	D	W	E	A	.	.	.	.	Q	F	S	C	T	I	N	Y	V	Q	S	L	R	E	L	Y	T	D	V	I	E	E	F	Y	W	V	A	L	P	L	T	T	Q
Query Conservation																																													.	.	.	.
Alig confidence																											.	.	.	.															.	.	.	.																							.	.	.	.	.
Template Conservation																											.	.	.	.																																									.	.	.	.	.
Template Sequence		N	S	K	T	R	V	V	V	G	X	S	G	G	V	D	S	S	V	T	A	L	L	L	K	E	.	.	.	.	Q	G	Y	D	V	I	G	I	F	X	K	N	W	D	D	T	D	C	T	A	T	E	D	Y	K	D	V	V	A	V	A	D	Q	I	G	I	P	Y	Y	S	.	.	.	.	.	V	N	F	E	K	E
Template Known Secondary structure		G	G	G	S								S	S													.	.	.	.	T	T																																	T						.	.	.	.	.
Template Predicted Secondary structure																											.	.	.	.																																									.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.					.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.						.	70	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		N	S	L	S	Q	Y	Q	P	E	W	Q	C	W	E	P	D	V	E	W	V	R	Q	P	P	Q	D	A	I	T	D	P	D	F	F	C	F	Y	Q	P	G	M	T	F	E	Q	F	V	R	E	F	A	E	W	F	S	Q	K	R	P	A	A	M	M	I	G	I	R	A	D	E	S	Y	N	R	F	V	A	I	A	S
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Template Sequence		Y	W	D	R	V	F	E	Y	F	L	A	E	Y	R	A	G	R	T	.	.	.	.	.	.	.	.	.	.	.	.	P	N	P	D	V	X	C	N	K	E	I	K	F	.	.	.	.	K	A	F	L	D	Y	A	I	T	L	G	A	D	Y	V	A	T	G	H	Y	A	R	V	A	R	D	E	D	G	T	V	H	X
Template Known Secondary structure						T										T	T			.	.	.	.	.	.	.	.	.	.	.	.											T	T	T	.	.	.	.	T								T	T	T		S							S							S	S	S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.													.	.	.	100	.	.	.	.	.	.	.	.	.					110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.			.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																								.	.
Query SS confidence																								.	.
Query Sequence		L	N	K	Q	R	F	A	D	D	K	P	W	T	T	A	A	P	G	G	H	S	W	.	.	Y	I	Y	P	I	Y	D	W	K	V	A	D	I	W	T	W	Y	A	N	H	Q	S	L
Query Conservation																								.	.
Alig confidence																								.	.
Template Conservation
Template Sequence		L	R	G	V	D	N	G	K	D	Q	T	Y	F	L	S	Q	L	S	Q	E	Q	L	Q	K	T	X	F	P	L	G	H	L	E	K	P	E	V	R	R	L	A	E	E	A	G	L	S
Template Known Secondary structure					S	S	T	T	T			G	G	G	G	T	T							T	T				T	T	T	T													T	T		T
Template Predicted Secondary structure
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions