|   |
28 | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
. | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
| . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | R | V | C | V | S | F | S | G | G | K | D | S | G | L | M | L | H | L | T | A | E | L | A | R | Q | M | G | K | K | I | C | V | L | F | I | D | W | E | A | Q | . |
. |
. |
. |
. |
. |
. |
. |
F | S | C | T | I | N | Y | V | Q | S | L | R | E | L | Y | T | D | V | I | E | E | F | Y | W | V | A | L | P | L | T | T |
Query Conservation |   |
|   |
|   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |   |
|   |   |
|   |   |   |   |
|   |
|
|
|   |
|
|
|   |
| . | . | . | . | . | . | . | . |
|
|
|
|   |
|
|
|   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |
|
|   |   | . | . | . | . |   |
|   |
|
|   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |
|
|
|   |   |   |
| . | . | . | . | . |
|
|   |   |   |
Template Sequence |   |
K | K | V | I | V | G | M | S | G | G | V | D | S | S | V | S | A | W | L | L | Q | Q | . |
. |
. |
. |
Q | G | Y | Q | V | E | G | L | F | M | K | N | W | E | E | D | D | G | E | E | Y | C | T | A | A | A | D | L | A | D | A | Q | A | V | C | D | K | L | G | I | E | L | H | T | . |
. |
. |
. |
. |
V | N | F | A | A |
Template Known Secondary structure |   |
|  |  |  |  |  |
|
| S |
| S | T | T |  |  |  |  |  |  |  |  | T | . | . | . | . | T |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
| S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  | . | . | . | . | . |  |  |
|  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  | . | . | . | . | . |  |  |
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
6 | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | |
|
|
|
. | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | |
|
|
|
|
. | . | . | . | . |
  |
  |   |
100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | |
|
. | . | . | . | 170 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  | . | . |  |
|  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | N | S | L | S | Q | Y | Q | P | E | W | Q | C | W | E | P | D | V | E | W | V | R | Q | P | P | Q | D | A | I | T | D | P | D | F | F | C | F | Y | Q | P | G | M | T | F | E | Q | F | V | R | E | F | A | E | W | F | S | Q | K | R | P | A | A | M | M | I | G | . |
. |
I | R | A | D | E | S | Y | N | R | F | V | A |
Query Conservation |   |
  |   |   |   |
|   |   |
|   |   |
|   |   |   |   |   |   |   |   |
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |
|   |   |   |   |
|   |
|
|
| . | . |
|
|   |
|
|
|   |   |
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |   |
|   |   |   |   |   |   |   |
|   |   |
|   |
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|   |   |
|
|   |   |
|
|
|   |   |
| . | . | . |
|   |   |   |
|   |   |   |
|   |   |   |
|
|
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |
|
Template Sequence |   |
E | Y | W | D | N | V | F | E | L | F | L | A | E | Y | K | A | G | R | T | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
P | N | P | D | I | L | C | N | K | E | I | K | F | K | A | F | . |
. |
. |
L | E | F | A | A | E | D | L | G | A | D | Y | I | A | T | G | H | Y | V | R | R | A | D | V | D | G | K | S | R | L |
Template Known Secondary structure |   |
 |  |  |  |  | T |  |  |  |  |  |  |  |  |  | T | T |
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  | T | T | T | T |  |  | . | . | . |  |  |  |  |  |  | T | T |
|
| S |  |  |  |
|
|
| S |
|  |  |  |  |  | T | T |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
77 | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | |
|
|
. | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . |
  |
  |   |
178 | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | |
|
. | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  | . | . |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | A | S | L | N | K | Q | R | F | A | D | D | K | P | W | T | T | A | A | P | G | G | H | S | W | . |
. |
Y | I | Y | P | I | Y | D | W | K | V | A | D | I | W | T | W | Y | A | N | H | Q | S | L |
Query Conservation |   |
  |   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |
|   |   |   | . | . |
|
|   |
|
|
|
|
|
|   |
|
|
|
|   |
|
|   |   |   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |
|   |   | . | . | . |
|
|
|
|
|
|
|   |   |
|   |   |   |   |
|   |   |   |
|   |
|
|
|   |
|   |
|   |
|
|
|   |
|
|   |   |   |
|
|   |
Template Sequence |   |
L | R | G | L | D | S | N | . |
. |
. |
K | D | Q | S | Y | F | L | Y | T | L | S | H | E | Q | I | A | Q | S | L | F | P | V | G | E | L | E | K | P | Q | V | R | K | I | A | E | D | L | G | L | V |
Template Known Secondary structure |   |
 |
|
| S | S | T | T | . | . | . | T |
|
| G | G | G | G | S | S |
|
|  |  |  |  |  |  |  |  |
|
| G | G | G | S |
|  |  |  |  |  |  |  |  |  |  | T | T |
|
|
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
| . | . | . |
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
142 | . | . | . | . | . | . | |
|
|
. | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . |
  |