Job Description P77216 Confidence 98.53% Date Thu Jan 5 12:26:29 GMT 2012 Rank 33 Aligned Residues 171 % Identity 13% Template c2derA_ PDB info PDB header:transferase/rna Chain: A: PDB Molecule:trna-specific 2-thiouridylase mnma; PDBTitle: cocrystal structure of an rna sulfuration enzyme mnma and2 trna-glu in the initial trna binding state Resolution 3.10 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.									.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.
Query Sequence		P	R	V	C	V	S	F	S	G	G	K	D	S	G	L	M	L	H	L	T	A	E	L	A	R	Q	M	G	K	K	I	C	V	L	F	I	D	W	E	A	Q	.	.	.	.	.	.	.	.	F	S	C	T	I	N	Y	V	Q	S	L	R	E	L	Y	T	D	V	I	E	E	F	Y	W	V	A	L	P	L	T	T
Query Conservation																																											.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.																.	.	.	.	.	.	.	.																						.	.	.	.	.
Template Conservation																								.	.	.	.																																													.	.	.	.	.
Template Sequence		K	K	V	I	V	G	M	S	G	G	V	D	S	S	V	S	A	W	L	L	Q	Q	.	.	.	.	Q	G	Y	Q	V	E	G	L	F	M	K	N	W	E	E	D	D	G	E	E	Y	C	T	A	A	A	D	L	A	D	A	Q	A	V	C	D	K	L	G	I	E	L	H	T	.	.	.	.	.	V	N	F	A	A
Template Known Secondary structure										S		S	T	T									T	.	.	.	.	T																S																						T						.	.	.	.	.
Template Predicted Secondary structure																								.	.	.	.																																													.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.					.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.						.	.	.	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.			.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure																																																																				.	.
Query SS confidence																																																																				.	.
Query Sequence		Q	N	S	L	S	Q	Y	Q	P	E	W	Q	C	W	E	P	D	V	E	W	V	R	Q	P	P	Q	D	A	I	T	D	P	D	F	F	C	F	Y	Q	P	G	M	T	F	E	Q	F	V	R	E	F	A	E	W	F	S	Q	K	R	P	A	A	M	M	I	G	.	.	I	R	A	D	E	S	Y	N	R	F	V	A
Query Conservation																																																																				.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.																	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Template Sequence		E	Y	W	D	N	V	F	E	L	F	L	A	E	Y	K	A	G	R	T	.	.	.	.	.	.	.	.	.	.	.	.	P	N	P	D	I	L	C	N	K	E	I	K	F	K	A	F	.	.	.	L	E	F	A	A	E	D	L	G	A	D	Y	I	A	T	G	H	Y	V	R	R	A	D	V	D	G	K	S	R	L
Template Known Secondary structure							T										T	T			.	.	.	.	.	.	.	.	.	.	.	.											T	T	T	T			.	.	.							T	T			S							S							T	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.													.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.				.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.			.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																											.	.
Query SS confidence																											.	.
Query Sequence		I	A	S	L	N	K	Q	R	F	A	D	D	K	P	W	T	T	A	A	P	G	G	H	S	W	.	.	Y	I	Y	P	I	Y	D	W	K	V	A	D	I	W	T	W	Y	A	N	H	Q	S	L
Query Conservation																											.	.
Alig confidence									.	.	.																.	.
Template Conservation									.	.	.
Template Sequence		L	R	G	L	D	S	N	.	.	.	K	D	Q	S	Y	F	L	Y	T	L	S	H	E	Q	I	A	Q	S	L	F	P	V	G	E	L	E	K	P	Q	V	R	K	I	A	E	D	L	G	L	V
Template Known Secondary structure					S	S	T	T	.	.	.	T			G	G	G	G	S	S													G	G	G	S												T	T
Template Predicted Secondary structure									.	.	.
Template SS confidence
		142	.	.	.	.	.	.				.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions