Job Description P43329 Confidence 99.97% Date Thu Jan 5 12:02:17 GMT 2012 Rank 20 Aligned Residues 322 % Identity 22% Template c4a4zA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:antiviral helicase ski2; PDBTitle: crystal structure of the s. cerevisiae dexh helicase ski2 bound to2 amppnp Resolution 2.40 Å

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		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	P	E	I	T	Y	P	D	N	L	P	V	S	Q	K	K	Q	D	I	L	E	A	I	R	D	H	Q	V	V	I	V	A	G	E	T	G	S	G	K	T	T	Q	L	P	K	I	C	M	E	L	G	R	G	I	K	G	L	I	G	H	T	Q	P	R	R	L	A	A	R	T	V	A	N	R	I	A	E	E	L
Query Conservation
Alig confidence										.	.																																	.																								.	.	.	.
Template Conservation										.	.																																	.																								.	.	.	.
Template Sequence		P	N	P	A	R	S	W	P	.	.	F	E	L	D	T	F	Q	K	E	A	V	Y	H	L	E	Q	G	D	S	V	F	V	A	A	H	T	S	A	G	K	T	V	.	V	A	E	Y	A	I	A	M	A	H	R	N	M	T	K	T	I	Y	T	S	P	I	K	.	.	.	.	A	L	S	N	Q	K	F	R	D	F
Template Known Secondary structure		S	S		S				S	.	.	S															T	T									T	T	S		S			.												T	T								S		G	.	.	.	.	G	G
Template Predicted Secondary structure										.	.																																	.																								.	.	.	.
Template SS confidence
		320	.	.	.	.	.	.	.			.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.					.	.	.	.	.	.	.	390	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200						.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																																										.															.	.	.	.	.
Query SS confidence																																										.															.	.	.	.	.
Query Sequence		K	T	E	P	G	G	C	I	G	Y	K	V	R	F	S	D	H	V	S	D	N	T	M	V	K	L	M	T	D	G	I	L	L	A	E	I	Q	Q	D	R	.	L	L	M	Q	Y	D	T	I	I	I	D	E	A	H	.	.	.	.	.	E	R	S	L	N	I	D	F	L	L	G	Y	L	K	E	L	L	P	R	R
Query Conservation																																										.															.	.	.	.	.
Alig confidence								.				.																														.															.	.	.	.	.														.	.	.	.	.	.
Template Conservation								.				.																																																															.	.	.	.	.	.
Template Sequence		K	E	T	F	V	N	.	I	G	L	.	I	T	G	D	V	Q	I	N	P	D	A	N	C	L	I	M	T	T	E	I	L	R	S	M	L	Y	R	G	A	D	L	I	R	D	V	E	F	V	I	F	D	E	V	H	Y	V	N	D	Q	D	R	G	V	V	W	E	E	V	I	I	M	L	.	.	.	.	.	.	P
Template Known Secondary structure			T	T				.				.			S	S					T	T	S	S																T		S	G	G	G	G									T	T				T	T		T	T										S	.	.	.	.	.	.
Template Predicted Secondary structure								.				.																																																															.	.	.	.	.	.
Template SS confidence
		393	.	.	.	.	.		.	400	.		.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.							.
		221	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.						.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260							.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure														.											.	.	.	.	.																			.	.	.	.	.	.																					.	.	.	.	.	.	.	.
Query SS confidence														.											.	.	.	.	.																			.	.	.	.	.	.																					.	.	.	.	.	.	.	.
Query Sequence		P	D	L	K	I	I	I	T	S	A	T	I	.	D	P	E	R	F	S	R	H	F	N	.	.	.	.	.	N	A	P	I	I	E	V	S	G	R	T	Y	P	V	E	V	R	Y	.	.	.	.	.	.	R	P	I	V	E	E	A	D	D	T	E	R	D	Q	L	Q	A	I	F	D	.	.	.	.	.	.	.	.
Query Conservation														.											.	.	.	.	.																			.	.	.	.	.	.																					.	.	.	.	.	.	.	.
Alig confidence														.											.	.	.	.	.																			.	.	.	.	.	.																					.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	H	V	K	F	I	L	L	S	A	T	V	P	N	T	Y	E	F	A	N	W	I	G	R	T	K	Q	K	N	I	Y	V	I	S	T	P	K	R	P	V	P	L	E	I	N	I	W	A	K	K	E	L	I	P	V	I	N	Q	N	S	E	F	L	E	A	N	F	R	K	H	K	E	I	L	N	D	G	P	S	K
Template Known Secondary structure		T	T											T	T													T									S	S		S	S									T	T								T	T			B																		T
Template Predicted Secondary structure
Template SS confidence
		467	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.
							281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	A	V	D	E	L	S	Q	E	S	H	G	D	I	L	I	F	M	S	G	E	R	E	I	R	D	T	A	D	A	L	N	K	L	N	L	R	H	T	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	T	W	P	E	I	V	N	Y	L	R	K	R	E	L	L	P	M	V	V	F	V	F	S	K	K	R	C	E	E	Y	A	D	W	L	E	G	I	N	F	C	N	N	K	E	K	S	Q	I	H	M	F	I	E	K	S	I	T	R	L	K	K	E	D	R	D	L	P	Q	I	L	K	T	R	S	L	L	E	R	G
Template Known Secondary structure		T												T	T			S						S											T	T	T	T																					T	T	S						T												T	T	T
Template Predicted Secondary structure
Template SS confidence
		612	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.			.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.
Query SS confidence																				.	.
Query Sequence		I	L	P	L	Y	A	R	L	S	N	S	E	Q	N	R	V	F	Q	.	.	S	H	S	G	R	R	I	V	L	A	T	N	V	A	E	T	S	L	T	V	P	G	I	K	Y	V	I	D	P	G	T	A	R	I	S	R	Y	S	Y	R	T	K	V	Q	R	L	P	I	E	P	I	S	Q	A	S	A	N	Q	R	K
Query Conservation																				.	.
Alig confidence																				.	.																						.												.	.	.	.	.	.	.	.	.
Template Conservation																																											.												.	.	.	.	.	.	.	.	.
Template Sequence		I	A	V	H	H	G	G	L	L	P	I	V	K	E	L	I	E	I	L	F	S	K	G	F	I	K	V	L	F	A	T	E	T	F	A	M	G	L	N	L	P	.	T	R	T	V	I	F	S	S	I	R	K	.	.	.	.	.	.	.	.	.	H	D	G	N	G	L	R	E	L	T	P	G	E	F	T	Q	M	A
Template Known Secondary structure							T	T	S														T	T			S						T					S					.		S					S		S			.	.	.	.	.	.	.	.	.			T	T
Template Predicted Secondary structure																																											.												.	.	.	.	.	.	.	.	.
Template SS confidence
		692	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.		.	.	.	.	.	.	.	740	.	.	.										.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.
		398	.	400	.	.	.	.				.	.	.	.	.	410	.	.	.
Predicted Secondary structure									.	.	.
Query SS confidence									.	.	.
Query Sequence		G	R	C	G	R	V	S	.	.	.	E	G	I	C	I	R	L	Y	S
Query Conservation									.	.	.
Alig confidence									.	.	.
Template Conservation
Template Sequence		G	R	A	G	R	R	G	L	D	S	T	G	T	V	I	V	M	A	Y
Template Known Secondary structure		G	G	G			T	T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		762	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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