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Job DescriptionP43329
Confidence99.97%DateThu Jan 5 12:02:17 GMT 2012
Rank20Aligned Residues322
% Identity22%Templatec4a4zA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:antiviral helicase ski2; PDBTitle: crystal structure of the s. cerevisiae dexh helicase ski2 bound to2 amppnp
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   67..70.........80.........90.........100.........110.........120.........130.........140......
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Query Sequence  ARPEITYPDNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVANRIAEEL
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Template Sequence  PNPARSWP. . FELDTFQKEAVYHLEQGDSVFVAAHTSAGKTV. VAEYAIAMAHRNMTKTIYTSPIK. . . . ALSNQKFRDF
Template Known Secondary structure  SS
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   320....... ..330.........340.........350......... 360.........370.........380.. .......390..
 
   147..150.........160.........170.........180...... ...190.........200 .........210.........220
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Query Sequence  KTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLAEIQQDR. LLMQYDTIIIDEAH. . . . . ERSLNIDFLLGYLKELLPRR
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Template Sequence  KETFVN. IGL. ITGDVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIML. . . . . . P
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SGGGG

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   393..... .400. ........410.........420.........430.........440.........450.........460... .
 
   221........230.. .......240.. .......250.........260 .........270.........280
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Query Sequence  PDLKIIITSATI. DPERFSRHFN. . . . . NAPIIEVSGRTYPVEVRY. . . . . . RPIVEEADDTERDQLQAIFD. . . . . . . .
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Template Sequence  QHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNDGPSK
Template Known Secondary structure  TT



TTT


SS
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   467..470.........480.........490.........500.........510.........520.........530.........540......
 
   281........290.........300.........310.........
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Query Sequence  . . . . . AVDELSQESHGDILIFMSGEREIRDTADALNKLNLRHTE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  KTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERG
Template Known Secondary structure  TTT

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TTS
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   612.......620.........630.........640.........650.........660.........670.........680.........690.
 
   320.........330....... ..340.........350.........360.........370.........380.........390.......
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Query Sequence  ILPLYARLSNSEQNRVFQ. . SHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRK
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Template Sequence  IAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLP. TRTVIFSSIRK. . . . . . . . . HDGNGLRELTPGEFTQMA
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   692.......700.........710.........720.........730.. .......740... ......750.........760.
 
   398.400.... .....410...
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Query Sequence  GRCGRVS. . . EGICIRLYS
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Template Sequence  GRAGRRGLDSTGTVIVMAY
Template Known Secondary structure  GGG

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   762.......770.........780
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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