Return to main results Retrieve Phyre Job Id

Job DescriptionP43329
Confidence97.37%DateThu Jan 5 12:02:17 GMT 2012
Rank167Aligned Residues109
% Identity18%Templatec3u5zM_
PDB info PDB header:dna binding protein/dnaChain: M: PDB Molecule:dna polymerase accessory protein 44; PDBTitle: structure of t4 bacteriophage clamp loader bound to the t4 clamp,2 primer-template dna, and atp analog
Resolution3.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   81........90..... ....100.........110.........120.........130.........140.........150.......
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Query Sequence  QKKQDILEAIRDHQV. . . VIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGYK
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Template Sequence  FDKETFKSITSKGKIPHIILHSPSPGTGKTTVA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . KALCHDVNADMMFVNGSD
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SSS
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GGG
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   28.30.........40.........50.........60 .........70........
 
   158.160.........170.........180.........190.........200.........210.........220.........230.
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Query Sequence  VRFSDHVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSAT
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Template Sequence  CKIDFVR. . . . . . . . . . . GPLTNFASAASFDGRQKVIVIDEFD. . RSGLAESQRHLRSFMEAYSSNCSIIITAN
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   7980..... ....90.........100.........110 .........120.........130.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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