Job Description P43329 Confidence 100.00% Date Thu Jan 5 12:02:17 GMT 2012 Rank 10 Aligned Residues 440 % Identity 17% Template c3rc8A_ PDB info PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase supv3l1, mitochondrial; PDBTitle: human mitochondrial helicase suv3 in complex with short rna fragment Resolution 2.90 Å

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		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	H	Q	V	V	I	V	A	G	E	T	G	S	G	K	T	T	Q	L	P	K	I	C	M	E	L	G	R	G	I	K	G	L	I	G	H	T	Q	P	R	R	L	A	A	R	T	V	A	N	R	I	A	E	E	L	K	T	E	P	G	G	C	I	G	Y	K	V	R	F	S	D	H	V	S	D	N	T	M	V	K
Query Conservation
Alig confidence																												.	.	.	.	.																					.
Template Conservation																												.	.	.	.	.																					.
Template Sequence		Q	R	K	I	I	F	H	S	G	P	T	N	S	G	K	T	Y	H	A	I	Q	K	Y	F	S	A	.	.	.	.	.	K	S	G	V	Y	C	G	P	L	K	L	L	A	H	E	I	F	E	K	S	.	N	A	A	G	V	P	C	D	L	V	T	G	E	E	R	V	T	V	Q	P	N	G	K	Q	A	S	H	V
Template Known Secondary structure											S	S	S	S	S	T	T										S	.	.	.	.	.	S	S						S	S												.			T	T								S	S						S	S	S	S				S
Template Predicted Secondary structure																												.	.	.	.	.																					.
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.						.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200						.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.																																		.
Query SS confidence																															.	.	.	.	.																																		.
Query Sequence		L	M	T	D	G	I	L	L	A	E	I	Q	Q	D	R	L	L	M	Q	Y	D	T	I	I	I	D	E	A	H	.	.	.	.	.	E	R	S	L	N	I	D	F	L	L	G	Y	L	K	E	L	L	P	R	R	P	D	L	K	I	I	I	T	S	A	T	I	D	.	P	E	R	F	S	R	H	F	N	N	A	P
Query Conservation																															.	.	.	.	.																																		.
Alig confidence									.	.	.	.	.	.	.																.	.	.	.	.															.	.	.	.	.															.
Template Conservation									.	.	.	.	.	.	.																																			.	.	.	.	.
Template Sequence		S	C	T	V	E	M	C	.	.	.	.	.	.	.	S	V	T	T	P	Y	E	V	A	V	I	D	E	I	Q	M	I	R	D	P	A	R	G	W	A	W	T	R	A	L	L	G	L	C	.	.	.	.	.	A	E	E	V	H	L	C	G	E	P	A	A	I	D	L	V	M	E	L	M	Y	T	T	G	E	E	V
Template Known Secondary structure					G	G	G		.	.	.	.	.	.	.		S	S	S										G	G	G	G	G		T	T	T													.	.	.	.	.										G	G	G												T
Template Predicted Secondary structure									.	.	.	.	.	.	.																																			.	.	.	.	.
Template SS confidence
		273	.	.	.	.	.	.								280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.						.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	E	V	S	G	R	T	Y	P	V	E	V	R	Y	R	P	I	V	E	E	A	D	D	T	E	R	D	Q	L	Q	A	I	F	D	A	V	D	E	L	S	Q	E	S	H	G	D	I	L	I	F	M	S	G	E	R	E	I	R	D	T	A	D	A	L	N	K	L	N	L	R	H	T	E	I	L	P	L	Y	A
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template Sequence		E	V	R	D	Y	K	R	L	T	P	I	S	V	L	D	H	A	L	E	S	L	D	N	L	R	P	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	I	V	C	F	S	K	N	D	I	Y	S	V	S	R	Q	I	E	I	R	.	.	.	G	L	E	S	A	V	I	Y	G
Template Known Secondary structure									S	S						S	S				S	S	T	T			T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S														T	.	.	.	T								T
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.																					.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.				.	390	.	.	.	.	.	.	.
		326	.	.	.	330	.	.	.	.	.	.	.					.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure														.	.	.	.
Query SS confidence														.	.	.	.
Query Sequence		R	L	S	N	S	E	Q	N	R	V	F	Q	.	.	.	.	S	H	S	G	R	R	I	V	L	A	T	N	V	A	E	T	S	L	T	V	P	G	I	K	Y	V	I	D	P	G	T	A	R	I	S	R	Y	S	Y	R	T	K	V	Q	R	L	P	I	E	P	I	S	Q	A	S	A	N	Q	R	K	G	R	C	G
Query Conservation														.	.	.	.
Alig confidence														.	.	.	.																						.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	L	P	P	G	T	K	L	A	Q	A	K	K	F	N	D	P	N	D	P	C	K	I	L	V	A	T	D	A	I	G	M	G	L	N	L	S	.	I	R	R	I	I	F	Y	S	L	I	K	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	I	T	T	S	Q	A	L	Q	I	A	G	R	A	G
Template Known Secondary structure		T	S															T	T		S								G	G	G	G	S	S					.	B	S					S		S	B			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B											T	T	B
Template Predicted Secondary structure																																							.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.		.	.	.	.	.	440	.	.	.	.	.	.																.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
		402	.	.					.	.	.	.	.	410	.	.	.	.	.			.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.			.	.	.	.	.	440	.	.	.	.	.	.	.							.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.												.	.																				.	.														.	.	.	.	.	.
Query SS confidence					.	.	.	.												.	.																				.	.														.	.	.	.	.	.
Query Sequence		R	V	S	.	.	.	.	E	G	I	C	I	R	L	Y	S	E	D	.	.	D	F	L	S	R	P	E	F	T	D	P	E	I	L	R	T	N	L	A	.	.	S	V	I	L	Q	M	T	A	L	G	L	G	D	.	.	.	.	.	.	I	A	A	F	P	F	V	E	A	P	D	K	R	N	I	Q	D	G	V	R
Query Conservation					.	.	.	.												.	.																				.	.														.	.	.	.	.	.
Alig confidence					.	.	.	.												.	.																				.	.														.	.	.	.	.	.
Template Conservation
Template Sequence		R	F	S	S	R	F	K	E	G	E	V	T	T	M	N	H	E	D	L	S	L	L	K	E	I	L	K	R	P	V	D	P	I	R	A	A	G	L	H	P	T	A	E	Q	I	E	M	F	A	Y	H	L	P	D	A	T	L	S	N	L	I	D	I	F	V	D	F	S	Q	V	D	G	Q	Y	F	V	C	N	M	D
Template Known Secondary structure				T	T	T			S						S	S												T	S																									T	T	S														B			T	T
Template Predicted Secondary structure
Template SS confidence
		473	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.
		468	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.		.	.	.	.	.	.	.				.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.
Predicted Secondary structure																										.								.	.	.
Query SS confidence																										.								.	.	.
Query Sequence		L	L	E	E	L	G	A	I	T	T	D	E	Q	A	S	A	Y	K	L	T	P	L	G	R	.	Q	L	S	Q	L	P	V	.	.	.	D	P	R	L	A	R	M	V	L	E	A	Q	K	H	G	C	V	R	E	A	M	I	I	T	S	A	L	S	I	Q	D	P	R	E	R	P	M	D	K	Q	Q	A	S	D	E
Query Conservation																										.								.	.	.
Alig confidence															.	.	.	.	.							.								.	.	.
Template Conservation															.	.	.	.	.
Template Sequence		D	F	K	F	S	A	E	L	I	Q	H	I	P	.	.	.	.	.	L	S	L	R	V	R	Y	V	F	C	T	A	P	I	N	K	K	Q	P	F	V	C	S	S	L	L	Q	F	A	R	Q	Y	S	R	N	E	P	L	T	F	A	W	L	R	R	Y	I	K	W	P	L	L	P	P	K	N	I	K	D	L	M	D
Template Known Secondary structure										T	T	T	S		.	.	.	.	.												S				T	T																	T	T												T	T	S	S					S	S
Template Predicted Secondary structure															.	.	.	.	.
Template SS confidence
		553	.	.	.	.	.	.	560	.	.	.	.	.						.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.
		544	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.										.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.
Query Sequence		K	H	R	R	F	H	D	K	E	S	D	F	L	A	F	V	N	L	W	N	Y	L	G	.	.	.	.	.	.	.	.	.	E	Q	Q	K	A	L	S	S	N	A	F	R	R	L	C	R	T	D	Y	L	N	Y	L	R	V	R	E	W	Q	D	I	Y	T	Q	L
Query Conservation																									.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.
Template Sequence		L	.	.	.	.	.	.	.	.	E	A	V	H	D	V	L	D	L	Y	L	W	L	S	Y	R	F	M	D	M	F	P	D	A	S	L	I	R	D	L	Q	K	E	L	D	G	I	I	Q	D	G	V	H	N	I	T	K	L	I	K	M	S	E	T	H	K	L	L
Template Known Secondary structure			.	.	.	.	.	.	.	.																		T	T	T	S																							T										T	T	S
Template Predicted Secondary structure			.	.	.	.	.	.	.	.
Template SS confidence
		628									.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.