Job Description P43329 Confidence 99.94% Date Thu Jan 5 12:02:17 GMT 2012 Rank 25 Aligned Residues 319 % Identity 22% Template c3l9oA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase dob1; PDBTitle: crystal structure of mtr4, a co-factor of the nuclear exosome Resolution 3.39 Å

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		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	I	T	Y	P	D	N	L	P	V	S	Q	K	K	Q	D	I	L	E	A	I	R	D	H	Q	V	V	I	V	A	G	E	T	G	S	G	K	T	T	Q	L	P	K	I	C	M	E	L	G	R	G	I	K	G	L	I	G	H	T	Q	P	R	R	L	A	A	R	T	V	A	N	R	I	A	E	E	L	K	T
Query Conservation
Alig confidence														.	.																											.																								.	.	.	.
Template Conservation														.	.																											.																								.	.	.	.
Template Sequence		E	A	R	T	Y	P	F	T	L	D	P	F	.	.	Q	D	T	A	I	S	C	I	D	R	G	E	S	V	L	V	S	A	H	T	S	A	G	K	T	V	.	V	A	E	Y	A	I	A	Q	S	L	K	N	K	Q	R	V	I	Y	T	S	P	I	K	.	.	.	.	A	L	S	N	Q	K	Y	R	E	L	L	A
Template Known Secondary structure			S	S			S	S						.	.									T	T	T									S	S	S					.												T	T								S	S		.	.	.	.
Template Predicted Secondary structure														.	.																											.																								.	.	.	.
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.			.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.					.	.	.	.	.	.	.	210	.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200						.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																																								.															.	.	.	.	.
Query SS confidence																																								.															.	.	.	.	.
Query Sequence		E	P	G	G	C	I	G	Y	K	V	R	F	S	D	H	V	S	D	N	T	M	V	K	L	M	T	D	G	I	L	L	A	E	I	Q	Q	D	R	.	L	L	M	Q	Y	D	T	I	I	I	D	E	A	H	.	.	.	.	.	E	R	S	L	N	I	D	F	L	L	G	Y	L	K	E	L	L	P	R	R	P	D
Query Conservation																																								.															.	.	.	.	.
Alig confidence						.				.																														.															.	.	.	.	.														.	.	.	.	.	.
Template Conservation						.				.																																																															.	.	.	.	.	.
Template Sequence		E	F	G	D	.	V	G	L	.	M	T	G	D	I	T	I	N	P	D	A	G	C	L	V	M	T	T	E	I	L	R	S	M	L	Y	R	G	S	E	V	M	R	E	V	A	W	V	I	F	D	E	V	H	Y	M	R	D	K	E	R	G	V	V	W	E	E	T	I	I	L	L	.	.	.	.	.	.	P	D	K
Template Known Secondary structure			T	S	S	.				.			S	S		B				S		S																	S	S												T	G	G	G	T	T	S														S	.	.	.	.	.	.		T	T
Template Predicted Secondary structure						.				.																																																															.	.	.	.	.	.
Template SS confidence
		215	.	.	.		.	220	.		.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.							.	.	.
		223	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.						.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270																		.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.											.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.											.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	K	I	I	I	T	S	A	T	I	.	D	P	E	R	F	S	R	H	F	N	.	.	.	.	.	N	A	P	I	I	E	V	S	G	R	T	Y	P	V	E	V	R	Y	R	P	I	V	E	E	A	D	D	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	R	D	Q	L	Q	A	I	F
Query Conservation												.											.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.											.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	R	Y	V	F	L	S	A	T	I	P	N	A	M	E	F	A	E	W	I	C	K	I	H	S	Q	P	C	H	I	V	Y	T	N	F	R	P	T	P	L	Q	H	Y	L	F	P	A	H	G	D	G	I	Y	L	V	V	D	E	K	S	T	F	R	E	E	N	F	Q	K	A	M	A	S	I	A	K	G	D	I	Y
Template Known Secondary structure		S								S		S	S												T		S											S	S									T	T	S	S								T	T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.																																	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	A	V	D	E	L	S	Q	E	S	H	G	D	I	L	I	F	M	S	G	E	R	E	I	R	D	T	A	D	A	L	N	K	L	N	L	R	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	E	I	L	P	L	Y	A	R	L
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	I	V	K	M	I	W	K	K	K	Y	N	P	V	I	V	F	S	F	S	K	R	D	C	E	E	L	A	L	K	M	S	K	L	D	F	N	S	D	A	L	T	K	I	F	N	N	A	I	A	L	L	P	E	T	D	R	E	L	P	Q	I	K	H	I	L	P	L	L	R	R	G	I	G	I	H	H	S	G	L
Template Known Secondary structure										T	T									S												T		S												G	G	G	S		T						T	T									T						T						S		S
Template Predicted Secondary structure
Template SS confidence
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
		328	.	330	.	.	.	.	.	.	.			.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure												.	.																																																																				.
Query SS confidence												.	.																																																																				.
Query Sequence		S	N	S	E	Q	N	R	V	F	Q	.	.	S	H	S	G	R	R	I	V	L	A	T	N	V	A	E	T	S	L	T	V	P	G	I	K	Y	V	I	D	P	G	T	A	R	I	S	R	Y	S	Y	R	T	K	V	Q	R	L	P	I	E	P	I	S	Q	A	S	A	N	Q	R	K	G	R	C	G	R	V	S	.
Query Conservation												.	.																																																																				.
Alig confidence												.	.																						.	.	.										.	.	.					.	.	.	.	.	.																						.
Template Conservation																																			.	.	.										.	.	.					.	.	.	.	.	.
Template Sequence		L	P	I	L	K	E	V	I	E	I	L	F	Q	E	G	F	L	K	V	L	F	A	T	E	T	F	S	I	G	L	N	M	K	.	.	.	T	V	V	F	T	S	V	R	K	.	.	.	W	D	G	Q	.	.	.	.	.	.	Q	F	R	W	V	S	G	G	E	Y	I	Q	M	S	G	R	A	G	R	R	G	L
Template Known Secondary structure																T									S				S						.	.	.					S		S			.	.	.		S	S	S	.	.	.	.	.	.																	S			S	S	S
Template Predicted Secondary structure																																			.	.	.										.	.	.					.	.	.	.	.	.
Template SS confidence
		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.				.	.	.	.	.	.	.	520	.				.	.	.	.							.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.
				405	.	.	.	.	410	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	E	G	I	C	I	R	L	Y	S	E
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		D	D	R	G	I	V	I	M	M	I	D	E
Template Known Secondary structure			S	S
Template Predicted Secondary structure
Template SS confidence
		550	.	.	.	.	.	.	.	.	.	560	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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