Job Description P43329 Confidence 100.00% Date Thu Jan 5 12:02:17 GMT 2012 Rank 1 Aligned Residues 621 % Identity 37% Template c3kx2A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:pre-mrna-splicing factor atp-dependent rna PDBTitle: crystal structure of prp43p in complex with adp Resolution 2.20 Å

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		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.			.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																																														.	.
Query SS confidence																																														.	.
Query Sequence		Y	P	D	N	L	P	V	S	Q	K	K	Q	D	I	L	E	A	I	R	D	H	Q	V	V	I	V	A	G	E	T	G	S	G	K	T	T	Q	L	P	K	I	C	M	E	.	.	L	G	R	G	I	K	G	L	I	G	H	T	Q	P	R	R	L	A	A	R	T	V	A	N	R	I	A	E	E	L	K	T	E	P
Query Conservation																																														.	.
Alig confidence																																														.	.
Template Conservation
Template Sequence		I	R	R	E	L	P	V	H	A	Q	R	D	E	F	L	K	L	Y	Q	N	N	Q	I	M	V	F	V	G	E	T	G	S	G	K	T	T	Q	I	P	Q	F	V	L	F	D	E	M	P	H	L	E	N	T	Q	V	A	C	T	Q	P	R	R	V	A	A	M	S	V	A	Q	R	V	A	E	E	M	D	V	K	L
Template Known Secondary structure				T	T	S	G	G	G	G	G												S								T	T	S	S															G	G	G	G	T								S																T	T			B
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	C	I	G	Y	K	V	R	F	S	D	H	V	S	D	N	T	M	V	K	L	M	T	D	G	I	L	L	A	E	I	Q	Q	D	R	L	L	M	Q	Y	D	T	I	I	I	D	E	A	H	E	R	S	L	N	I	D	F	L	L	G	Y	L	K	E	L	L	P	R	R	P	D	L	K	I	I	I	T	S	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	E	E	V	G	Y	S	I	R	F	E	N	K	T	S	N	K	T	I	L	K	Y	M	T	D	G	M	L	L	R	E	A	M	E	D	H	D	L	S	R	Y	S	C	I	I	L	D	E	A	H	E	R	T	L	A	T	D	I	L	M	G	L	L	K	Q	V	V	K	R	R	P	D	L	K	I	I	I	M	S	A
Template Known Secondary structure		T	T	T						T	T						T	T																			T	T		T	T									G	G	G																				T	T								S
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		T	I	D	P	E	R	F	S	R	H	F	N	N	A	P	I	I	E	V	S	G	R	T	Y	P	V	E	V	R	Y	R	P	I	V	E	E	A	D	D	T	E	R	D	Q	L	Q	A	I	F	D	A	V	D	E	L	S	Q	E	.	S	H	G	D	I	L	I	F	M	S	G	E	R	E	I	R	D	T	A	D	A
Query Conservation																																																												.
Alig confidence																																	.	.	.	.	.	.																						.
Template Conservation																																	.	.	.	.	.	.
Template Sequence		T	L	D	A	E	K	F	Q	R	Y	F	N	D	A	P	L	L	A	V	P	G	R	T	Y	P	V	E	L	Y	Y	T	.	.	.	.	.	.	P	E	F	Q	R	D	Y	L	D	S	A	I	R	T	V	L	Q	I	H	A	T	E	E	A	G	D	I	L	L	F	L	T	G	E	D	E	I	E	D	A	V	R	K
Template Known Secondary structure		S	S									T	T	S																			.	.	.	.	.	.	S	S			S																	S		S								S	S
Template Predicted Secondary structure																																	.	.	.	.	.	.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.							280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		310	.	.	.									.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.								.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.
Query Sequence		L	N	K	L	.	.	.	.	.	.	.	.	N	L	R	H	T	E	I	L	P	L	Y	A	R	L	S	N	S	E	Q	N	R	V	F	Q	S	H	S	G	.	.	.	.	.	.	.	R	R	I	V	L	A	T	N	V	A	E	T	S	L	T	V	P	G	I	K	Y	V	I	D	P	G	T	A	R	I	S	R	Y
Query Conservation						.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	S	L	E	G	D	Q	L	V	R	E	E	G	C	G	P	L	S	V	Y	P	L	Y	G	S	L	P	P	H	Q	Q	Q	R	I	F	E	P	A	P	E	S	H	N	G	R	P	G	R	K	V	V	I	S	T	N	I	A	E	T	S	L	T	I	D	G	I	V	Y	V	V	D	P	G	F	S	K	Q	K	V	Y
Template Known Secondary structure																									T	T							G	G	G	G	S						S	S	S	S										T					S				T	T
Template Predicted Secondary structure
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence		S	Y	R	T	K	V	Q	R	L	P	I	E	P	I	S	Q	A	S	A	N	Q	R	K	G	R	C	G	R	V	S	E	G	I	C	I	R	L	Y	S	E	D	D	F	L	S	.	R	P	E	F	T	D	P	E	I	L	R	T	N	L	A	S	V	I	L	Q	M	T	A	L	G	L	G	D	I	A	A	F	P	F
Query Conservation																																															.
Alig confidence																																															.
Template Conservation
Template Sequence		N	P	R	I	R	V	E	S	L	L	V	S	P	I	S	K	A	S	A	Q	Q	R	A	G	R	A	G	R	T	R	P	G	K	C	F	R	L	Y	T	E	E	A	F	Q	K	E	L	I	E	Q	S	Y	P	E	I	L	R	S	N	L	S	S	T	V	L	E	L	K	K	L	G	I	D	D	L	V	H	F	D	F
Template Known Secondary structure			T	T	T	T																				G	G	G	S	S	S	S						S	S								T	S		S	S				G	G	G	G													T	T				S	T	T
Template Predicted Secondary structure
Template SS confidence
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.
		454	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	A	P	D	K	R	N	I	Q	D	G	V	R	L	L	E	E	L	G	A	I	T	T	D	E	Q	A	S	A	Y	K	L	T	P	L	G	R	Q	L	S	Q	L	P	V	D	P	R	L	A	R	M	V	L	E	A	Q	K	H	G	C	V	R	E	A	M	I	I	T	S	A	L	S	I	Q	D	P	R	E	R
Query Conservation
Alig confidence																													.	.	.	.	.
Template Conservation																													.	.	.	.	.
Template Sequence		M	D	P	P	A	P	E	T	M	M	R	A	L	E	E	L	N	Y	L	A	C	L	D	D	E	G	N	.	.	.	.	.	L	T	P	L	G	R	L	A	S	Q	F	P	L	D	P	M	L	A	V	M	L	I	G	S	F	E	F	Q	C	S	Q	E	I	L	T	I	V	A	M	L	S	V	P	N	V	F	I	R
Template Known Secondary structure		S	S																	T	T	S	B		T	T	S		.	.	.	.	.	B								T	T	S	S	S											G	G	G	G	T													T	S				B
Template Predicted Secondary structure																													.	.	.	.	.
Template SS confidence
		483	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.						510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.
		534	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	M	D	K	Q	Q	A	S	D	E	K	H	R	R	F	H	D	K	E	S	D	F	L	A	F	V	N	L	W	N	Y	L	G	E	Q	Q	K	A	L	S	S	N	A	F	R	R	L	C	R	T	D	Y	L	N	Y	L	R	V	R	E	W	Q	D	I	Y	T	Q	L	R	Q	V	V	K	E	L	G	I	P	V	N
Query Conservation
Alig confidence																																							.	.
Template Conservation																																							.	.
Template Sequence		P	T	K	D	K	K	R	A	D	D	A	K	N	I	F	A	H	P	D	G	D	H	I	T	L	L	N	V	Y	H	A	F	K	S	D	E	A	.	.	Y	E	Y	G	I	H	K	W	C	R	D	H	Y	L	N	Y	R	S	L	S	A	A	D	N	I	R	S	Q	L	E	R	L	M	N	R	Y	N	L	E	L	N
Template Known Secondary structure			T	T											T	T			T	T	B													T	S				.	.												T	T	B																						T	T
Template Predicted Secondary structure																																							.	.
Template SS confidence
		558	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.			.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.
		614	.	.	.					.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.		.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.																										.
Query SS confidence						.	.	.	.																										.
Query Sequence		S	E	P	A	.	.	.	.	E	Y	R	E	I	H	I	A	L	L	T	G	L	L	S	H	I	G	M	K	D	A	D	K	Q	.	E	Y	T	G	A	R	N	A	R	F	S	I	F	P	G	S	G	L	F	K	K	P	P	K	W	V	M	V	A	E	L	V	E	T	S	R	L	W	G	R	I	A	A	R	I	D
Query Conservation						.	.	.	.																										.
Alig confidence						.	.	.	.																										.																						.
Template Conservation																																																									.
Template Sequence		T	T	D	Y	E	S	P	K	Y	F	D	N	I	R	K	A	L	A	S	G	F	F	M	Q	V	A	K	K	R	S	G	A	K	G	Y	I	T	V	K	D	N	Q	D	V	L	I	H	P	S	T	V	L	G	H	D	.	A	E	W	V	I	Y	N	E	F	V	L	T	S	K	N	Y	I	R	T	V	T	S	V	R
Template Known Secondary structure					T	T	S	T	T														T	T	S						T	T	T	S	S				T	T	T								T	T	S				T	T	.		S										S	S	S
Template Predicted Secondary structure																																																									.
Template SS confidence
		636	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690		.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.
		689	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	W	V	E	P	V	A	Q	H	L	I	K	R	T	Y	S	E	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	E	W	L	I	E	I	A	P	A	Y	Y	D	L	S	N	F	Q	K
Template Known Secondary structure										T	T	T	S		G	G	G	S		S
Template Predicted Secondary structure
Template SS confidence
		715	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.