Phyre 2 alignment of P43329 with c3i5yA

Job Description P43329
Confidence 99.85% Date Thu Jan 5 12:02:17 GMT 2012

Rank 35 Aligned Residues 321

% Identity 17% Template c3i5yA_

PDB info PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase mss116; PDBTitle: structure of mss116p bound to ssrna containing a single 5-bru and amp-2 pnp

Resolution 2.49 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.			.	.	.	.	.	100	.	.	.	.	.	.	.	.			.	110	.			.	.	.	.	.	.	.	.	120	.	.	.			.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																.	.															.	.				.	.													.	.
Query SS confidence																.	.															.	.				.	.													.	.
Query Sequence	S	Q	K	K	Q	D	I	L	E	A	I	R	D	H	Q	.	.	V	V	I	V	A	G	E	T	G	S	G	K	T	T	.	.	Q	L	P	.	.	K	I	C	M	E	L	G	R	G	I	K	G	.	.	L	I	G	H	T	Q	P	R	R	L	A	A	R	T	V	A	N	R	I	A	E	E	L	K	T	E	P	G
Query Conservation																.	.															.	.				.	.													.	.
Alig confidence																.	.															.	.				.	.													.	.
Template Conservation
Template Sequence	T	P	V	Q	Q	K	T	I	K	P	I	L	S	S	E	D	H	D	V	I	A	R	A	K	T	G	T	G	K	T	F	A	F	L	I	P	I	F	Q	H	L	I	N	T	K	F	D	S	Q	Y	M	V	K	A	V	I	V	A	P	T	R	D	L	A	L	Q	I	E	A	E	V	K	K	I	H	D	M	N	Y	G
Template Known Secondary structure														S	S										T	T	S																	T	T	T	S	S	T	T	S								S	S																	T		G	G
Template Predicted Secondary structure
Template SS confidence
	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.

	152	.	.	.	.	.	.	.	160	.	.	.	.	.											.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.			.	.	.	190	.	.	.	.	.	.	.	.	.	200	.						.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.																						.	.																.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.																						.	.																.	.	.	.	.
Query Sequence	G	C	I	G	Y	K	V	R	F	S	D	H	V	S	.	.	.	.	.	.	.	.	.	.	D	N	T	M	V	K	L	M	T	D	G	I	L	L	A	E	I	Q	Q	D	R	.	.	L	L	M	Q	Y	D	T	I	I	I	D	E	A	H	E	.	.	.	.	.	R	S	L	N	I	D	F	L	L	G	Y	L	K
Query Conservation															.	.	.	.	.	.	.	.	.	.																						.	.																.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.																						.	.																.	.	.	.	.
Template Conservation
Template Sequence	L	K	K	Y	A	C	V	S	L	V	G	G	T	D	F	R	A	A	M	N	K	M	N	K	L	R	P	N	I	V	I	A	T	P	G	R	L	I	D	V	L	E	K	Y	S	N	K	F	F	R	F	V	D	Y	K	V	L	D	E	A	D	R	L	L	E	I	G	F	R	D	D	L	E	T	I	S	G	I	L	N
Template Known Secondary structure	G	G	G	S							T	T	S															S																						T	T								T					T	S	T	T	T
Template Predicted Secondary structure
Template SS confidence
	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.

	215	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.				.	.	.	.	.	240	.	.	.	.	.	.	.	.	.					250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure					.																	.	.	.																.	.	.	.
Query SS confidence					.																	.	.	.																.	.	.	.
Query Sequence	E	L	L	P	.	R	R	P	D	L	K	I	I	I	T	S	A	T	I	D	P	.	.	.	E	R	F	S	R	H	F	N	N	A	P	I	I	E	V	.	.	.	.	S	G	R	T	Y	P	V	E	V	R	Y	R	P	I	V	E	E	A	D	D	T	E	R	D	Q	L	Q	A	I	F	D	A	V	D	E	L	S
Query Conservation					.																	.	.	.																.	.	.	.
Alig confidence					.																	.	.	.																.	.	.	.
Template Conservation
Template Sequence	E	K	N	S	K	S	A	D	N	I	K	T	L	L	F	S	A	T	L	D	D	K	V	Q	K	L	A	N	N	I	M	N	K	K	E	C	L	F	L	D	T	V	D	K	N	E	P	E	A	H	E	R	I	D	Q	S	V	V	I	S	E	K	F	A	N	S	I	F	A	A	V	E	H	I	K	K	Q	I	K	E
Template Known Secondary structure				S	S		T	T									S	S			T						T	G	G	G			S	S							S	S		S	S	S		S	S		T	T									S	S	S	T
Template Predicted Secondary structure
Template SS confidence
	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.

	287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.			.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure																																																				.	.
Query SS confidence																																																				.	.
Query Sequence	Q	E	S	H	G	D	I	L	I	F	M	S	G	E	R	E	I	R	D	T	A	D	A	L	N	K	L	N	L	R	H	T	E	I	L	P	L	Y	A	R	L	S	N	S	E	Q	N	R	V	F	Q	.	.	S	H	S	G	R	R	I	V	L	A	T	N	V	A	E	T	S	L	T	V	P	G	I	K	Y	V	I
Query Conservation																																																				.	.
Alig confidence																																																				.	.
Template Conservation
Template Sequence	R	D	S	N	Y	K	A	I	I	F	A	P	T	V	K	F	T	S	F	L	C	S	I	L	K	N	E	F	K	K	D	L	P	I	L	E	F	H	G	K	I	T	Q	N	K	R	T	S	L	V	K	R	F	K	K	D	E	S	G	I	L	V	C	T	D	V	G	A	R	G	M	D	F	P	N	V	H	E	V	L
Template Known Secondary structure	T	T	T									S	S																T	T	T	S						S	T	T	S																S	S							G	G	G	T	S	S				T	T
Template Predicted Secondary structure
Template SS confidence
	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.

	365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.		.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence	D	P	G	T	A	R	I	S	R	Y	S	Y	R	T	K	V	Q	R	L	P	I	E	P	I	S	Q	A	S	A	N	Q	R	K	G	R	C	G	R	V	.	S	E	G	I	C	I	R	L	Y	S	E	D	D	F	L
Query Conservation																																								.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	Q	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	P	S	E	L	A	N	Y	I	H	R	I	G	R	T	A	R	S	G	K	E	G	S	S	V	L	F	I	C	K	D	E	L	P
Template Known Secondary structure			S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S	T								T	T	S	S		T	T											G	G	G
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	450	.	.																			.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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