Job Description P43329 Confidence 99.71% Date Thu Jan 5 12:02:17 GMT 2012 Rank 49 Aligned Residues 303 % Identity 20% Template c3h1tA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:type i site-specific restriction-modification PDBTitle: the fragment structure of a putative hsdr subunit of a type2 i restriction enzyme from vibrio vulnificus yj016 Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		84	.	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.				.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.						.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure												.															.	.	.																	.	.	.	.	.
Query SS confidence												.															.	.	.																	.	.	.	.	.
Query Sequence		Q	D	I	L	E	A	I	R	D	H	.	Q	V	V	I	V	A	G	E	T	G	S	G	K	T	.	.	.	T	Q	L	P	K	I	C	M	E	L	G	R	G	I	K	G	.	.	.	.	.	L	I	G	H	T	Q	P	R	R	L	A	A	R	T	V	A	N	R	I	A	E	E	L	K	T	E	P	G	G	C	I
Query Conservation												.															.	.	.																	.	.	.	.	.
Alig confidence												.															.	.	.																	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	R	A	V	Q	S	V	L	Q	G	K	K	R	S	L	I	T	X	A	T	G	T	G	K	T	V	V	A	F	Q	I	S	W	K	L	W	S	A	R	W	N	R	T	G	D	Y	R	K	P	R	I	L	F	L	A	D	T	.	.	.	.	.	.	.	.	.	.	.	.	F	T	P	F	G	D	A	R	H	K	I
Template Known Secondary structure										T	T		S								T	T	S																T	T			S	S		S	S	S											.	.	.	.	.	.	.	.	.	.	.	.		T	T	T		S	S
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.													.	.	.	.	.	250	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		G	Y	K	V	R	F	S	D	H	V	S	D	N	T	M	V	K	L	M	T	D	G	I	L	L	A	E	I	Q	Q	D	R	L	L	M	Q	Y	D	T	I	I	I	D	E	A	H	E	R	S	L	N	I	D	F	L	L	G	Y	L	K	E	L	L	P	R	R	P	D	L	K	I	I	I	T	S	A	T	I	.	.
Query Conservation																																																																																.	.
Alig confidence		.	.	.	.	.	.	.																											.													.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Template Conservation		.	.	.	.	.	.	.																											.													.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	E	G	V	V	K	S	R	E	I	Y	F	A	I	Y	Q	S	I	P	G	L	Y	K	E	F	P	Q	.	D	F	F	D	L	I	I	I	D	E	C	H	.	.	.	.	.	.	.	.	.	.	.	.	W	R	E	I	L	E	Y	F	E	P	A	F	Q	I	G	X	T	A	T	P	L	R
Template Known Secondary structure		.	.	.	.	.	.	.					S	S		S						G	G	G				G	G	G	G	S		T	.	T	S		S					S				.	.	.	.	.	.	.	.	.	.	.	.								S	T	T	S							S	S		S
Template Predicted Secondary structure		.	.	.	.	.	.	.																											.													.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
									267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.		.	.	.	.	.	.	.	300	.	.	.	.													.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
			233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250								.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.							270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.			.	290	.	.	.	.	.	.
Predicted Secondary structure		.																			.	.	.	.	.	.	.																				.	.	.	.	.	.																				.	.
Query SS confidence		.																			.	.	.	.	.	.	.																				.	.	.	.	.	.																				.	.
Query Sequence		.	D	P	E	R	F	S	R	H	F	N	N	A	P	I	I	E	V	S	.	.	.	.	.	.	.	G	R	T	Y	P	V	E	V	R	Y	R	P	I	V	E	E	A	D	D	.	.	.	.	.	.	T	E	R	D	Q	L	Q	A	I	F	D	A	V	D	E	L	S	Q	E	.	.	S	H	G	D	I	L	I	F
Query Conservation		.																			.	.	.	.	.	.	.																				.	.	.	.	.	.																				.	.
Alig confidence		.											.								.	.	.	.	.	.	.																				.	.	.	.	.	.																				.	.
Template Conservation													.
Template Sequence		E	D	N	R	D	T	Y	R	Y	F	G	.	N	P	I	Y	T	Y	S	L	R	Q	G	I	D	D	G	F	L	A	P	Y	R	V	H	R	V	I	S	E	V	D	A	T	K	D	F	E	R	V	I	A	L	K	A	R	T	D	A	F	A	K	H	L	T	D	F	X	K	R	T	D	R	F	A	K	T	I	V	F
Template Known Secondary structure		T	T	T							S		.	S		S												T	S	S											T	T					S										T																	T	T	S
Template Predicted Secondary structure													.
Template SS confidence
		344	.	.	.	.	.	350	.	.	.	.		.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.								.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.			.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.																										.	.
Query SS confidence																		.	.	.	.	.	.	.																										.	.
Query Sequence		M	S	G	E	R	E	I	R	D	T	A	D	A	L	N	K	.	.	.	.	.	.	.	L	N	L	R	H	T	E	I	L	P	L	Y	A	R	L	S	N	S	E	Q	N	R	V	F	Q	.	.	S	H	S	G	R	R	I	V	L	A	T	N	V	A	E	T	S	L	T	V	P	G	I	K	Y	V	I	D	P	G
Query Conservation																		.	.	.	.	.	.	.																										.	.
Alig confidence																		.	.	.	.	.	.	.																										.	.
Template Conservation
Template Sequence		C	V	D	Q	E	H	A	D	E	X	R	R	A	L	N	N	L	N	S	D	L	S	R	K	H	P	D	Y	V	A	R	V	T	S	E	E	G	K	I	G	K	G	H	L	S	R	F	Q	E	L	E	T	S	T	P	V	I	L	T	T	S	Q	L	L	T	T	G	V	D	A	P	T	C	K	N	V	V	L	A	R
Template Known Secondary structure			S	S															T					T	T		T	T	S					S	S	T	T														T	T										S	S	T	T	T	T	T				T	T								S
Template Predicted Secondary structure
Template SS confidence
		446	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.														.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	A	R	I	S	R	Y	S	Y	R	T	K	V	Q	R	L	P	I	E	P	I	S	Q	A	S	A	N	Q	R	K	G	R	C	G	R	V	S	E	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	C	I	R	L	Y	S	E	D	D	F	L	S	R	P	E	F	T	D	P	E	I	L	R	T	N	L	A
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	V	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	X	S	E	F	K	Q	I	V	G	R	G	T	R	L	R	E	D	Y	G	K	L	W	F	N	I	I	D	Y	T	G	S	A	T	Q	N	F	A	D	P	D	F	D	G	Y	P	E	I	E	D	E	V	V	I	D	E	D	G	E
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T	T	S				B	G	G	G	T	B	S								S	S	S					T										S									T	T	S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		526	.	.																			.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.
		435	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	V	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		588	.	590

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions